View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_20 (Length: 532)
Name: NF19929_low_20
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_20 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 52953201 - 52953715
Alignment:
| Q |
18 |
acttatactcagagaaattgatcaatctcaaaagaaactaacccagattgaaaaacagcttcttggttatgaaagttttgatctttcaagacccaacatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953201 |
acttatactcagagaaattgatcaatctcaaaagaaactaacccagattgaaaaacagcttcttggttatgaaagttttgatctttcaagacccaacatt |
52953300 |
T |
|
| Q |
118 |
gcaaaagagcttaaactctttctcaaccctcataaacttcctttgggtaaagattccaagactggaatgactgaaatggtttcatctgtgggtcattctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953301 |
gcaaaagagcttaaactctttctcaaccctcataaacttcctttgggtaaagattccaagactggaatgactgaaatggtttcatctgtgggtcattctt |
52953400 |
T |
|
| Q |
218 |
gtgagaaatcttccgatttgttgtctcagtatatgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaag |
317 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52953401 |
gtgagaaatcttctgatttgttgtctcagtatatgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgatttcgaaaag |
52953500 |
T |
|
| Q |
318 |
gtgtgagcctttacctagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953501 |
gtgtgagcctttacctagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagt |
52953600 |
T |
|
| Q |
418 |
aacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggtta |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953601 |
aacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggtta |
52953700 |
T |
|
| Q |
518 |
atgggtatgagaatc |
532 |
Q |
| |
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|||| |||||||||| |
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| T |
52953701 |
atggatatgagaatc |
52953715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Complemental strand, 31904325 - 31903811
Alignment:
| Q |
18 |
acttatactcagagaaattgatcaatctcaaaagaaactaacccagattgaaaaacagcttcttggttatgaaagttttgatctttcaagacccaacatt |
117 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31904325 |
acttatactcagagaaattgatcagtctcaaaagaaactagcccagatagaaaaacagcttcttggctatgaaagttttgatctttcaagacccaacatt |
31904226 |
T |
|
| Q |
118 |
gcaaaagagcttaaactctttctcaaccctcataaacttcctttgggtaaagattccaagactggaatgactgaaatggtttcatctgtgggtcattctt |
217 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |||||| |
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| T |
31904225 |
gcaaaagagctcaaactttttcttaaccctcataaacttcctttgggtaaagattccaaaactggaatgactgagatggtttcatctatgggctattctt |
31904126 |
T |
|
| Q |
218 |
gtgagaaatcttccgatttgttgtctcagtatatgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaag |
317 |
Q |
| |
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||||||||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
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| T |
31904125 |
gtgagaaatcttctgatttgatgtcccagtatatgaattacaaagtatttggaaattgtcaagatgattggagttatgctcagaaattgattttgaaagg |
31904026 |
T |
|
| Q |
318 |
gtgtgagcctttacctagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagt |
417 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31904025 |
gtgtgagcctttaccaagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaaacctgttagt |
31903926 |
T |
|
| Q |
418 |
aacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggtta |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31903925 |
aacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgcatgcattgctttgatttggtta |
31903826 |
T |
|
| Q |
518 |
atgggtatgagaatc |
532 |
Q |
| |
|
|||| |||||||||| |
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| T |
31903825 |
atggttatgagaatc |
31903811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 377 - 532
Target Start/End: Complemental strand, 31922101 - 31921946
Alignment:
| Q |
377 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
476 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31922101 |
atcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31922002 |
T |
|
| Q |
477 |
gaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatc |
532 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
31922001 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatc |
31921946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 377 - 532
Target Start/End: Original strand, 31673573 - 31673728
Alignment:
| Q |
377 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
476 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31673573 |
atcttcatccttttccaacttcactttggaaacctgttagcaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31673672 |
T |
|
| Q |
477 |
gaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatc |
532 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31673673 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatc |
31673728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 22 - 517
Target Start/End: Original strand, 7760082 - 7760571
Alignment:
| Q |
22 |
atactcagagaaattgatcaatctcaaaagaaactaacccagattgaaaaacagcttcttggttatgaaagttttgatctttcaagacccaacattgcaa |
121 |
Q |
| |
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||||||||||| || ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7760082 |
atactcagagagatagatttgtctcaaaagaaactagcccagatggaaaaacagcttcttggttatgaaagcattgatctttcaagacccaacattgcaa |
7760181 |
T |
|
| Q |
122 |
aagagcttaaactctttctcaaccctcataaacttcctttgggtaaagattccaagactggaatgactgaaatggtttcatctgtgggtcattcttgtga |
221 |
Q |
| |
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| ||||| ||| |||| ||| | ||| |||||||||| || || ||||| | ||||| || ||||||||||| ||||| || |||||||||||||| |
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| T |
7760182 |
atgagctgaaaatcttcctccaaagacatcaacttcctttaggcaaggattcaagaactgggatcactgaaatggtgtcatcagttggtcattcttgtga |
7760281 |
T |
|
| Q |
222 |
gaaatcttccgatttgttgtctcagtatatgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaaggtgt |
321 |
Q |
| |
|
|||| | | || |||||||| |||| |||| |||||| | | |||| ||||| |||||||||||| | || |||||| |||| || ||| ||||| |
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|
| T |
7760282 |
gaaaagtgcagacttgttgtcacagttcatgagttacaaggcttctggagcttgtcctgatgattggagtgtagctcagaaactgatcttaaaagggtgt |
7760381 |
T |
|
| Q |
322 |
gagcctttacctagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaaca |
421 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||||||| || | | | | || ||||||||| ||| |||||||||||| || |||| | |
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| T |
7760382 |
gagcctttacctagaagaaggtgtttttcaaaaactgtttc----aaaatcaggtttttt--tccttttcctgtttctctttggaagcctcttggtaata |
7760475 |
T |
|
| Q |
422 |
aaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggtta |
517 |
Q |
| |
|
| ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||||| ||| | |||| ||||||||||||| |
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| T |
7760476 |
acacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgatttggtta |
7760571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 12052579 - 12052462
Alignment:
| Q |
190 |
gaaatggtttcatctgtgggtcattcttgtgagaaatcttccgatttgttgtctcagtatatgaattacaaagtgtttggaaattgtcaagatgattgga |
289 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| || || |||||||| | ||||| | |||||| || ||||||| ||||| ||||||| |
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| T |
12052579 |
gaaatggtttcatttgtgggtcattctagtgagaaatcttctgaattcttgtctcaacacatgaacttcaaagtaattcgaaattgccaagacgattgga |
12052480 |
T |
|
| Q |
290 |
gttttgcacagaaattga |
307 |
Q |
| |
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| |||||| ||||||||| |
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| T |
12052479 |
gatttgcatagaaattga |
12052462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 517
Target Start/End: Original strand, 28959879 - 28959985
Alignment:
| Q |
411 |
tgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgat |
510 |
Q |
| |
|
|||| |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||||| ||| | |||| |||||| |
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| T |
28959879 |
tgttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgat |
28959978 |
T |
|
| Q |
511 |
ttggtta |
517 |
Q |
| |
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||||||| |
|
|
| T |
28959979 |
ttggtta |
28959985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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