View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_low_22 (Length: 521)
Name: NF19929_low_22
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 2338634 - 2338126
Alignment:
| Q |
1 |
atctcccactgtgattacacctaacaaatgcatccatttcttcaaagcattgacacatcttttagattcttcttcctcagaactagttgttagaccaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2338634 |
atctcccactgtgattacacctaacaaatgcatccatttcttcaaagcattgacacatcttttagattcttcttcctcagaactagttgttagaccaaaa |
2338535 |
T |
|
| Q |
101 |
tatcttttcccaacaaccattcgaagaaccatgttaaacgttaaatgtgtaaaccattgatccaactctactagcacatagtttgatgaatatgactcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2338534 |
tatcttttcccaacaaccattcgaagaaccatgttaaacgttaaatgtgtaaaccattgatccaactctactagcacatagtttgatgaatatgactcat |
2338435 |
T |
|
| Q |
201 |
tgtttttgctagtccaaacattaaagagctctttaatcgatgctcgaacttcaggaacacgaacatgttgttgttgtttgactcggcgatttgtgaggac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2338434 |
tgtttttgctagtccaaacattaaagagctctttaatcgatgcttgaacttcaggaacacgaacatgttgttgttgtttgactcggcgatttgtgaggac |
2338335 |
T |
|
| Q |
301 |
ctctaaggttacaatcttgcgaagttggcgccaataaggaccatatggtgcaagaccaaacatggctccattatagcccaagtgttctgttgcaacaagc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2338334 |
ctctaaggttacaatcttgcgaagttggcgccaataaggaccatatggtgcaagaccaaacatggctccattataacccaagtgttctgttgcaacaagc |
2338235 |
T |
|
| Q |
401 |
tttggacgagacgaaacgaccgtgtcgttcgtagtgaaacattccttggccatttcccaattgttgagtattaaatcatgtttagtgccaagcttgatgg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2338234 |
tttggacgagacgaaacgaccgtgtcgttcgtagtgaaacattccttggccatttcccaattgttgagtattaaagcatgtttagtgccaagcttgatgg |
2338135 |
T |
|
| Q |
501 |
tgaataatg |
509 |
Q |
| |
|
||||||||| |
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|
| T |
2338134 |
tgaataatg |
2338126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 2306313 - 2305805
Alignment:
| Q |
1 |
atctcccactgtgattacacctaacaaatgcatccatttcttcaaagcattgacacatcttttagattcttcttcctcagaactagttgttagaccaaaa |
100 |
Q |
| |
|
||||||||| || ||||| || |||||||||||| ||||||||||||| || |||||| |||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
2306313 |
atctcccaccgtaattaccccaaacaaatgcatcaatttcttcaaagctttcacacatattttagattcgtcttcctccgaactagttattagaccaaaa |
2306214 |
T |
|
| Q |
101 |
tatcttttcccaacaaccattcgaagaaccatgttaaacgttaaatgtgtaaaccattgatccaactctactagcacatagtttgatgaatatgactcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| | |
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| T |
2306213 |
tatcttttcccaacaaccattcgaagaaccatgttgaatgttaaatgtgtaaaccattgatccaactctactaacacgtagtttgatgaatacgactcgt |
2306114 |
T |
|
| Q |
201 |
tgtttttgctagtccaaacattaaagagctctttaatcgatgctcgaacttcaggaacacgaacatgttgttgttgtttgactcggcgatttgtgaggac |
300 |
Q |
| |
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| |||||| ||| ||| || | ||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||| |||||||||||||| |
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|
| T |
2306113 |
tatttttggtagaccagacgtcaaatagctctttaatcgatgctcgaacctcagaaacacgaacatgttgttgttgttcgattcgacgatttgtgaggac |
2306014 |
T |
|
| Q |
301 |
ctctaaggttacaatcttgcgaagttggcgccaataaggaccatatggtgcaagaccaaacatggctccattatagcccaagtgttctgttgcaacaagc |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
2306013 |
ctctagggttacaatcttgcgaagttggcgccaataaggaccatacggaccaaaaccaaacattgctccattatagcccaagtgtttcgttgcaacaagc |
2305914 |
T |
|
| Q |
401 |
tttggacgagacgaaacgaccgtgtcgttcgtagtgaaacattccttggccatttcccaattgttgagtattaaatcatgtttagtgccaagcttgatgg |
500 |
Q |
| |
|
|| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||| |
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| T |
2305913 |
ttgggacgagacgaaacgaccatgtcgtgtgtagtaaaacattccttggccatttcccaattgttgagaattaaagcacgtttagaaccaagcttgatgg |
2305814 |
T |
|
| Q |
501 |
tgaataatg |
509 |
Q |
| |
|
||||||||| |
|
|
| T |
2305813 |
tgaataatg |
2305805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 98 - 506
Target Start/End: Complemental strand, 2349586 - 2349178
Alignment:
| Q |
98 |
aaatatcttttcccaacaaccattcgaagaaccatgttaaacgttaaatgtgtaaaccattgatccaactctactagcacatagtttgatgaatatgact |
197 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| ||||| |||| |||||||||||||| | ||| || || | || ||||||||| | |||||||| |
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|
| T |
2349586 |
aaatatctcttcccaacagccattcgaagaaccatattaaatgttaggtgtgtaaaccattgcttcaaatccaccaacatatagtttgacggatatgact |
2349487 |
T |
|
| Q |
198 |
cattgtttttgctagtccaaacattaaagagctctttaatcgatgctcgaacttcaggaacacgaacatgttgttgttgtttgactcggcgatttgtgag |
297 |
Q |
| |
|
| || ||||||||| |||||||| |||||||||||||| |||| | ||||||||| ||||||||||||||||||||| | | ||| ||||| ||||| |
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|
| T |
2349486 |
ctttctttttgctataccaaacatcgaagagctctttaattgatgtttgaacttcagaaacacgaacatgttgttgttgaataattcgacgattggtgag |
2349387 |
T |
|
| Q |
298 |
gacctctaaggttacaatcttgcgaagttggcgccaataaggaccatatggtgcaagaccaaacatggctccattatagcccaagtgttctgttgcaaca |
397 |
Q |
| |
|
|| ||||||||||||||| |||||||||| ||||||||||||||||| ||| ||| ||||| | |||||| |||| | |||||||| |||| || |
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|
| T |
2349386 |
gatctctaaggttacaattttgcgaagttcacgccaataaggaccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatg |
2349287 |
T |
|
| Q |
398 |
agctttggacgagacgaaacgaccgtgtcgttcgtagtgaaacattccttggccatttcccaattgttgagtattaaatcatgtttagtgccaagcttga |
497 |
Q |
| |
|
||||| |||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||| |
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|
| T |
2349286 |
agcttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttga |
2349187 |
T |
|
| Q |
498 |
tggtgaata |
506 |
Q |
| |
|
| ||||||| |
|
|
| T |
2349186 |
tagtgaata |
2349178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 410
Target Start/End: Complemental strand, 2356010 - 2355925
Alignment:
| Q |
325 |
ttggcgccaataaggaccatatggtgcaagaccaaacatggctccattatagcccaagtgttctgttgcaacaagctttggacgag |
410 |
Q |
| |
|
||||||||||||||||||||| ||| ||| |||||||||||||| || |||| ||||| ||||||||||| || ||||||| |
|
|
| T |
2356010 |
ttggcgccaataaggaccataaggtcatagaattaacatggctccattgtaagccaaatgttcagttgcaacaagtttaggacgag |
2355925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 5805660 - 5806165
Alignment:
| Q |
1 |
atctcccactgtgattacacctaacaaatgcatccatttc-ttcaaagcattgacacatcttttagattcttcttcctcagaactagttgttagaccaaa |
99 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||| || || |||||||| || ||| ||||| || || |||||| ||| | ||||| || |||||| |
|
|
| T |
5805660 |
atctcccacagtgattatccctgacaaatgcatc-atctcattcaaagctttcacagttctttgagctttttcttcatcaacaatagtttttgcaccaaa |
5805758 |
T |
|
| Q |
100 |
atatcttttcccaacaaccattcgaagaaccatgttaaacgttaaatgtgtaaaccattgatccaactctactagcacatagtttgatgaatatgactca |
199 |
Q |
| |
|
|||||| ||||||||||||| || ||| ||||| ||||| |||| |||||||||||||| | ||| || || | |||||||||||||| || ||| || |
|
|
| T |
5805759 |
atatctcttcccaacaaccaatctaaggaccatattaaatgttacgtgtgtaaaccattgcttcaagtccaccaacacatagtttgatggatttgattcg |
5805858 |
T |
|
| Q |
200 |
ttgtttttgctagtccaaacattaaagagctctttaatcgatgctcgaacttcaggaacacgaacatgttgttgttgtttgactcggcgatttgtgagga |
299 |
Q |
| |
|
|| ||||| |||| ||||| ||| ||||||||||||||||||| | ||||||||| |||||||| |||||| || || | ||||| ||| | ||||| | |
|
|
| T |
5805859 |
ttcttttttctagaccaaatattgaagagctctttaatcgatgtttgaacttcagaaacacgaatatgttgatgatgctcgactctacgactggtgagaa |
5805958 |
T |
|
| Q |
300 |
cctctaaggttacaatcttgcgaagttggcgccaataaggaccatatggtgcaagaccaaacatggctccattatagcccaagtgttctgttgcaacaag |
399 |
Q |
| |
|
|||||| || |||||||||||| ||||||||||| |||||||| | |||| |||||||||||||| ||||| | |||||||| ||||||||||| |
|
|
| T |
5805959 |
tctctaaatttgaaatcttgcgaaggtggcgccaatatggaccataggccgcaaagccaaacatggctcctttataagctaagtgttcagttgcaacaag |
5806058 |
T |
|
| Q |
400 |
ctttggacgagacgaaacgaccgtgtcgttcgtagtgaaacattccttggccatttcccaattgttgagtattaaatcatgtttagtgccaagcttgatg |
499 |
Q |
| |
|
|||||||||||||||||||| | | || || ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||| |
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|
| T |
5806059 |
ctttggacgagacgaaacgatcatatcatttgtagtgaaacattccttagccatttcccaattgttgagtactaaggcatgtttaggaccaagcttgatg |
5806158 |
T |
|
| Q |
500 |
gtgaata |
506 |
Q |
| |
|
||||||| |
|
|
| T |
5806159 |
gtgaata |
5806165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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