View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_23 (Length: 521)
Name: NF19929_low_23
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_23 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 38725542 - 38726030
Alignment:
| Q |
19 |
ggtattcctagaaaacatgtccggagaacttgtatagacatggtattcgtagatatctgccgggtgttttagtggatgttcagaactgtcgcagtttgag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |
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| T |
38725542 |
ggtattcctagaaaacatgtccggagaacttgtatagacatggtattcgtagatatctgctgggtgttttagtggatgttcagaaccgttgcagtttgag |
38725641 |
T |
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| Q |
119 |
ataatttgaatatcaggataagtactttttatagcttcgtaaaatttcatgtaatttccttcatagtactgcataccacaatcttcatttccaatagcaa |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725642 |
ataatttgaatatcaggataagtacgttttatagcttcgtaaaatttcatgtaatttccttcatagtactgcataccacaatcttcatttccaatagcaa |
38725741 |
T |
|
| Q |
219 |
caaatttcaaattaaatggttgagaatgtcccatggaagccctaacagaaccccattgtgaattggcatgacctctagcaaactcaataccatctagggc |
318 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725742 |
caaatttcaaattacatggttgaggatgtcccatggaagccctaacagaaccccattgtgaattggcatgacctctagcaaactcaataccatctagggc |
38725841 |
T |
|
| Q |
319 |
ttcttgtacccatggtccaatgttagcggtactaatttcatcgctacggctaataccggcattaaacacccatataggtaatgcaccaagatcctctgct |
418 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725842 |
ttcttgcacccatggtccaatgttagcggtactaatttcatcgctacggctaataccggcattaaacacccatataggtaatgcaccaagatcctctgct |
38725941 |
T |
|
| Q |
419 |
agttggagaccttcaaaataacctaatccatcgtcactccaataactgtaaacgtcgttccagtggccggatctctcttcccttggccc |
507 |
Q |
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| T |
38725942 |
agttggagaccttcaaaataacctaatccatcgtcactccaataactgtaaacgtcgttccagtggccggatctctcttcccttggccc |
38726030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 321
Target Start/End: Complemental strand, 30981 - 30860
Alignment:
| Q |
200 |
tcttcatttccaatagcaacaaatttcaaattaaatggttgagaatgtcccatggaagccctaacagaaccccattgtgaattggcatgacctctagcaa |
299 |
Q |
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|||||||||||||| ||||||||| |||||| |||||| | || ||||||||||||||| |||| ||||||||||||||| ||| | ||||||||||| |
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| T |
30981 |
tcttcatttccaatggcaacaaatctcaaatcaaatggctcaggatgtcccatggaagctctaagagaaccccattgtgatgtggaagaacctctagcaa |
30882 |
T |
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| Q |
300 |
actcaataccatctagggcttc |
321 |
Q |
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| T |
30881 |
actcaataccatctagggcttc |
30860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 31223 - 31167
Alignment:
| Q |
100 |
agaactgtcgcagtttgagataatttgaatatcaggataagtactttttatagcttc |
156 |
Q |
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| T |
31223 |
agaaccgtcacaatttgagataatttgaatatcaggataatcatgttttatagcttc |
31167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 321
Target Start/End: Complemental strand, 34164160 - 34164039
Alignment:
| Q |
200 |
tcttcatttccaatagcaacaaatttcaaattaaatggttgagaatgtcccatggaagccctaacagaaccccattgtgaattggcatgacctctagcaa |
299 |
Q |
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|||||||||||||| ||||||||| |||||| |||||| | || ||||||||||||||| |||| ||||||||||||||| ||| | ||||||||||| |
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| T |
34164160 |
tcttcatttccaatggcaacaaatctcaaatcaaatggctcaggatgtcccatggaagctctaagagaaccccattgtgatgtggaagaacctctagcaa |
34164061 |
T |
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| Q |
300 |
actcaataccatctagggcttc |
321 |
Q |
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| T |
34164060 |
actcaataccatctagggcttc |
34164039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 321
Target Start/End: Complemental strand, 34170657 - 34170536
Alignment:
| Q |
200 |
tcttcatttccaatagcaacaaatttcaaattaaatggttgagaatgtcccatggaagccctaacagaaccccattgtgaattggcatgacctctagcaa |
299 |
Q |
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|||||||||||||| ||||||||| |||||| |||||| | || ||||||||||||||| |||| ||||||||||||||| ||| | ||||||||||| |
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| T |
34170657 |
tcttcatttccaatggcaacaaatctcaaatcaaatggctcaggatgtcccatggaagctctaagagaaccccattgtgatgtggaagaacctctagcaa |
34170558 |
T |
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| Q |
300 |
actcaataccatctagggcttc |
321 |
Q |
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|||||||||||||||||||||| |
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| T |
34170557 |
actcaataccatctagggcttc |
34170536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 321
Target Start/End: Complemental strand, 34214256 - 34214135
Alignment:
| Q |
200 |
tcttcatttccaatagcaacaaatttcaaattaaatggttgagaatgtcccatggaagccctaacagaaccccattgtgaattggcatgacctctagcaa |
299 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| |||||| | || ||||||||||||||| |||| ||||||||||||||| ||| | ||||||||||| |
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| T |
34214256 |
tcttcatttccaatggcaacaaatctcaaatcaaatggctcaggatgtcccatggaagctctaagagaaccccattgtgatgtggaagaacctctagcaa |
34214157 |
T |
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| Q |
300 |
actcaataccatctagggcttc |
321 |
Q |
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|||||||||||||||||||||| |
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| T |
34214156 |
actcaataccatctagggcttc |
34214135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 34465672 - 34465559
Alignment:
| Q |
196 |
acaatcttcatttccaatagcaacaaatttcaaattaaatggttgagaatgtcccatggaagccctaacagaaccccattgtgaattggcatga-cctct |
294 |
Q |
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||||||||| || |||||||||||| |||| | ||||| |||| | |||||||| || || |||||||| ||||||| |||| ||| |||| ||||| |
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| T |
34465672 |
acaatcttcgttaccaatagcaacatattttaggttaaaaggttttgggtgtcccatagatgctctaacagagccccattttgaagtgg-atgaacctct |
34465574 |
T |
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| Q |
295 |
agcaaactcaatacc |
309 |
Q |
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||||||||||||||| |
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| T |
34465573 |
agcaaactcaatacc |
34465559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 34164402 - 34164346
Alignment:
| Q |
100 |
agaactgtcgcagtttgagataatttgaatatcaggataagtactttttatagcttc |
156 |
Q |
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||||| ||| || ||||||||||||||||||||||||||| | |||||||||||| |
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| T |
34164402 |
agaaccgtcacaatttgagataatttgaatatcaggataatcatgttttatagcttc |
34164346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 34170899 - 34170843
Alignment:
| Q |
100 |
agaactgtcgcagtttgagataatttgaatatcaggataagtactttttatagcttc |
156 |
Q |
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| T |
34170899 |
agaaccgtcacaatttgagataatttgaatatcaggataatcatgttttatagcttc |
34170843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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