View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_low_25 (Length: 482)
Name: NF19929_low_25
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 15 - 468
Target Start/End: Complemental strand, 26738181 - 26737728
Alignment:
| Q |
15 |
ggcaagagaagtggttagtgtcagggcaattcgttcaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26738181 |
ggcaagagaagtggttagtgtcagggcaattcgtccaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
26738082 |
T |
|
| Q |
115 |
aggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaataacaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26738081 |
aggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaataacaag |
26737982 |
T |
|
| Q |
215 |
acagaatatcgcttcaaattcttacctcgtgttcagtttaacagctatcactatggattccgtaaaaattacacctataaacaatgtgagcatttgtgct |
314 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
26737981 |
acagaatatcgcttcaaattcttaccacgtgttaagtttaacagctataactatggattccataaaaattacacctataaacaatgtaagcatatatgct |
26737882 |
T |
|
| Q |
315 |
tacaaatgtgtgaatgcatagccttccaatttcgctatatcaagaaaaagggtgtgaataattgttatccaaagacgcagttactaaacggccttcgttc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26737881 |
tacaaatgtgtgaatgcatagccttccaatttcgctatatcaagaaaaagggtgtgaataattgttatccaaagacgcagttactaaacggccttcgttc |
26737782 |
T |
|
| Q |
415 |
gacagagtttaaaggttcactctttttgaaattgccaaaaaacaatattgtttt |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26737781 |
gacagagtttaaaggttcactctttttgaaattgccaaaaaacaatatagtttt |
26737728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Complemental strand, 26714945 - 26714491
Alignment:
| Q |
15 |
ggcaagagaagtggttagtgtcagggcaattcgttcaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26714945 |
ggcaagagaagtggttagtgtcagggcaattcgtccaacaaccatgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
26714846 |
T |
|
| Q |
115 |
aggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaataacaag |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26714845 |
aggtagaaaatgttcgtgtcttctaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcatgcaataacaag |
26714746 |
T |
|
| Q |
215 |
acagaatatcgcttcaaattcttacctcgtgttcagtttaacagctatcactatggattccgtaaaaattacacctataaacaatgtgagcatttgtgct |
314 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||| | |||| |
|
|
| T |
26714745 |
acagaatatcgcttcaaattcttaccccgtgttgagtttaacagctatgactatggattccataaaaattacacctatgaacaatgtaagcatctatgct |
26714646 |
T |
|
| Q |
315 |
tacaaatgtgtgaatgcatagccttccaatttcgctatatcaagaaaaagggtgtgaataattgttatccaaagacgcagttactaaacggccttcgttc |
414 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26714645 |
tacaaatgtgtgaatgcatagctttccaatttcgctatgtcaagaaaaagggtgtgaataattgttatccaaagacgcagttactaaacggccttcagtc |
26714546 |
T |
|
| Q |
415 |
gacagagtttaaaggttcactctttttgaaattgccaaaaaacaatattgttttt |
469 |
Q |
| |
|
|||| |||| | ||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
26714545 |
gacaaagttcagaggttcactctttttgaaattgccaaaaaccaatatagttttt |
26714491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 15 - 469
Target Start/End: Complemental strand, 26699796 - 26699342
Alignment:
| Q |
15 |
ggcaagagaagtggttagtgtcagggcaattcgttcaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
114 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||| | || |||||||||||||| ||||| |||||||||||||| ||| |||||||||||| ||||| || |
|
|
| T |
26699796 |
ggcaagagaattggtcagtaacagggcaattcctccagcaaccttgtcaaatacatgggatttgtggacctaatagcgcttgcagttatgatccaagaac |
26699697 |
T |
|
| Q |
115 |
aggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaataacaag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
26699696 |
tggtagaaaatgttcgtgtcttccaggttatagcataatcaacaaccaggactggtctcaaggatgcaaaccaagcttcaaattttcttgc---aacaag |
26699600 |
T |
|
| Q |
215 |
acagaatatcgcttcaaattcttacctcgtgttcagtttaacagct---atcactatggattccgtaaaaattacacctataaacaatgtgagcatttgt |
311 |
Q |
| |
|
||| | | ||| |||| | ||||||||| | || ||||| ||| || | || ||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
26699599 |
acaaagtctcgtttcatagtcttacctcatcttgagtttgacaacttcgacaaccatgtattctacgaaaattacacctataaacaatgtaagcatttgt |
26699500 |
T |
|
| Q |
312 |
gcttacaaatgtgtgaatgcatagccttccaatttcgctatatcaagaaaaagggtgtgaataattgttatccaaagacgcagttactaaacggccttcg |
411 |
Q |
| |
|
| || | | |||||||||||||||||||||||||||||||||| | || ||||| | | ||||||| ||||||||||||||| |||||| | || |
|
|
| T |
26699499 |
gtttgcgattgtgtgaatgcatagccttccaatttcgctatatgactgaagagggtttctcttattgttacccaaagacgcagttattaaacgtacgccg |
26699400 |
T |
|
| Q |
412 |
ttcgacagagtttaaaggttcactctttttgaaattgccaaaaaacaatattgttttt |
469 |
Q |
| |
|
||| || |||||| |||| ||| ||||| || ||||||||||||||||| ||||||| |
|
|
| T |
26699399 |
ttcaacggagtttgaaggctcagtctttctgcgattgccaaaaaacaatactgttttt |
26699342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 15 - 469
Target Start/End: Complemental strand, 26734950 - 26734505
Alignment:
| Q |
15 |
ggcaagagaagtggttagtgtcagggcaattcgttcaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
114 |
Q |
| |
|
|||||| ||| |||| ||| ||||||||||| | || |||||||||||||| || || |||||||||||||| || ||||| |||||| ||||| || |
|
|
| T |
26734950 |
ggcaagtgaattggtcagtaacagggcaattcctccagcaaccttgtcaaatacacgggatttgtggacctaatagtgcttgcggttatgatccaagaac |
26734851 |
T |
|
| Q |
115 |
aggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaataacaag |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
26734850 |
tggtagaaaatgttcatgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgc---aacaag |
26734754 |
T |
|
| Q |
215 |
acagaatatcgcttcaaattcttacctcgtgttcagtttaacagctatcactatggattccgtaaaaattacacctataaacaatgtgagcatttgtgct |
314 |
Q |
| |
|
||| | | ||| |||||| ||||||| | |||| ||||| ||| |||||| || | ||||||||||||||||| || ||| |||||||||| | |
|
|
| T |
26734753 |
acaaagtctcgtttcaaagtcttaccccatgttgagtttgaca------actatgaatcctataaaaattacacctatagtcagtgtaagcatttgtgtt |
26734660 |
T |
|
| Q |
315 |
tacaaatgtgtgaatgcatagccttccaatttcgctatatcaagaaaaagggtgtgaataattgttatccaaagacgcagttactaaacggccttcgttc |
414 |
Q |
| |
|
||| | |||||||||||||||||||||||| ||||||| | | || ||||| | | ||||||| ||||||||||||||| ||||||| | | ||| |
|
|
| T |
26734659 |
tacgatcatgtgaatgcatagccttccaattttgctatatgagggaagagggtttctcttattgttacccaaagacgcagttattaaacggacgccattc |
26734560 |
T |
|
| Q |
415 |
gacagagtttaaaggttcactctttttgaaattgccaaaaaacaatattgttttt |
469 |
Q |
| |
|
||| ||| |||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
26734559 |
aacaacgttcgaaggttcactctttctgcgattgccaaaaaacaatactgttttt |
26734505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 26693643 - 26693849
Alignment:
| Q |
15 |
ggcaagagaagtggttagtgtcagggcaattcgttcaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
114 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||| |||| ||||||||||||||||| || ||| || || | | ||||| || |
|
|
| T |
26693643 |
ggcaagagaagtggttgatttcagggcaattccaccaacaacctttaaaaatacatggaatttgtggaccgaatagctattccattaacaatccaaaaac |
26693742 |
T |
|
| Q |
115 |
aggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaataacaag |
214 |
Q |
| |
|
|| ||||| ||| ||||||||| ||||||| || |||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||| ||||| |
|
|
| T |
26693743 |
cggaagaaagtgtgtgtgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaacaaa |
26693842 |
T |
|
| Q |
215 |
acagaat |
221 |
Q |
| |
|
||||||| |
|
|
| T |
26693843 |
acagaat |
26693849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 26676597 - 26676401
Alignment:
| Q |
17 |
caagagaagtggttagtgtcagggcaattcgttcaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaaag |
116 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||||| |||| |||||||||||||||||||| || ||||| | || ||||| || | |
|
|
| T |
26676597 |
caagagaagtggtcgatttcagggcaattccaccaacaacctttcaaaatacatggaatttgtggacctaatagtgtttgcattaataatccaagaactg |
26676498 |
T |
|
| Q |
117 |
gtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaataacaa |
213 |
Q |
| |
|
||||||| |||| |||| |||| |||||||||| ||| |||| ||| |||||||||| ||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
26676497 |
gtagaaagtgtttgtgtgttcccggttatagcaggatcgataatcaaaattggtctcaggggtgcaaaccaaacttccaactttcatgcaataacaa |
26676401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 26689493 - 26689683
Alignment:
| Q |
17 |
caagagaagtggttagtgtcagggcaattcgttcaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaaag |
116 |
Q |
| |
|
||||||||||||| | | ||||| |||||| |||||||||| |||| |||||||||||||||||||| ||| ||||| | | | ||| || | |
|
|
| T |
26689493 |
caagagaagtggtcaatttcaggacaattccaccaacaacctttcaaaatacatggaatttgtggacctaatagcttttgcattaacaatgcaagaattg |
26689592 |
T |
|
| Q |
117 |
gtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaa |
207 |
Q |
| |
|
|||| ||||||| |||| |||| |||| ||| | ||| |||| ||||||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
26689593 |
gtaggaaatgtttgtgtgttcctggttttaggaggatccataatcaagattggtcacaagggtgcaaaccaagcttccaactttcatgcaa |
26689683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 26745115 - 26745030
Alignment:
| Q |
116 |
ggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttc |
201 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| || ||| |||| ||||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
26745115 |
ggtagaaagtgttcgtgccttccaggttatatcaggatcgataatcaagactggttccaagggtgcaaaccaagcttccaactttc |
26745030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 26693914 - 26693978
Alignment:
| Q |
280 |
aaattacacctataaacaatgtgagcatttgtgcttacaaatgtgtgaatgcatagccttccaat |
344 |
Q |
| |
|
||||| |||||||||||||||| |||| || ||||| | |||||||||||||||||||||||||| |
|
|
| T |
26693914 |
aaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaat |
26693978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 26676328 - 26676258
Alignment:
| Q |
280 |
aaattacacctataaacaatgtgagcatttgtgcttacaaatgtgtgaatgcatagccttccaatttcgct |
350 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||| |||||| |||| |||||||||||| ||||| |
|
|
| T |
26676328 |
aaattacacttataaacaatgtaagcatttctgcttacgaatgtgccaatgtgtagccttccaatatcgct |
26676258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 26752104 - 26752008
Alignment:
| Q |
49 |
tcaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaaaggtagaaaatgttcgtgtcttccaggttat |
145 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| || ||||| ||| ||| |||| | | |||||||| ||||| ||||| || |||||| |
|
|
| T |
26752104 |
tcaacaaccttgttttattcatggaatttgtgggcctaatagtacttgtagtaatgatccattgactggtagaaagtgttcttgtctacctggttat |
26752008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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