View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_31 (Length: 456)

Name: NF19929_low_31
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_31
NF19929_low_31
[»] chr4 (3 HSPs)
chr4 (22-447)||(2244321-2244734)
chr4 (251-318)||(10430721-10430788)
chr4 (252-318)||(54780297-54780363)
[»] chr7 (3 HSPs)
chr7 (246-375)||(35406185-35406311)
chr7 (246-375)||(47261904-47262030)
chr7 (389-432)||(23071699-23071742)
[»] chr5 (3 HSPs)
chr5 (246-375)||(9718127-9718253)
chr5 (246-375)||(15928200-15928326)
chr5 (251-318)||(23284729-23284796)
[»] chr8 (1 HSPs)
chr8 (272-347)||(34546425-34546500)
[»] chr1 (2 HSPs)
chr1 (246-373)||(1803400-1803524)
chr1 (251-313)||(21741032-21741094)
[»] chr6 (1 HSPs)
chr6 (251-310)||(19740350-19740409)
[»] chr2 (2 HSPs)
chr2 (252-375)||(38987991-38988111)
chr2 (266-318)||(40446095-40446147)
[»] chr3 (1 HSPs)
chr3 (251-311)||(54577634-54577694)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 22 - 447
Target Start/End: Original strand, 2244321 - 2244734
Alignment:
Q  22 gactgcacaatccttcacgctcaattcctagctgtggagaacgccgagttgcactgattcactcgacggtaaagggaaagctgcggagttgatttgtttt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2244321 gactgcacaatccttcacgctcaattcctagctgtggagaacgccgagttgcactgattcactcgacggtaaagggaaagctacggagttgatttgtttt 2244420  T
Q  122 ttcaactcagtggtgagtgacaaatttcaggttctgaattcttttctcaatatgcctcctaagattcctcctaagattagaaaatatgaatccggatatg 221  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||            ||||| ||||||||||||||||    
T  2244421 ttcaactcagtagtgagtgacaaatttcaggttctgaattcttttctcaatatgcctcctaagttt------------agaaagtatgaatccggatatg 2244508  T
Q  222 agaaacgtaagnnnnnnnnnnnncttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttgaaaa 321  Q
    |||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244509 agaaacgtaagaaaaagaaaaaacttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttgaaaa 2244608  T
Q  322 tcagaatgtcggtaatgttaatgttgatgttgaaattcttgaaaatgtggttacatctgagaagagtaatatggagaatgaaagtgttgatttggaaaat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2244609 tcagaatgtcggtaatgttaatgttgatgttgaaattcttgaaaatgtggttacaactgagaagagtaatatggagaatgaaagtgttgatttggaaaat 2244708  T
Q  422 agaggtgatgttaatggtgatgatgt 447  Q
    ||||||||||||||||||||||||||    
T  2244709 agaggtgatgttaatggtgatgatgt 2244734  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 10430788 - 10430721
Alignment:
Q  251 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 318  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  10430788 gagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattga 10430721  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 54780297 - 54780363
Alignment:
Q  252 agtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 318  Q
    |||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  54780297 agttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattccttttga 54780363  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 375
Target Start/End: Complemental strand, 35406311 - 35406185
Alignment:
Q  246 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 342  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  35406311 ttgaaaagttcattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 35406218  T
Q  343 tgttgatgttgaaattcttgaaaatgtggttac 375  Q
    ||||||||||| | |||||||||||||||||||    
T  35406217 tgttgatgttggagttcttgaaaatgtggttac 35406185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 375
Target Start/End: Complemental strand, 47262030 - 47261904
Alignment:
Q  246 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 342  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  47262030 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 47261937  T
Q  343 tgttgatgttgaaattcttgaaaatgtggttac 375  Q
    ||||||||||| | |||||||||||||||||||    
T  47261936 tgttgatgttggagttcttgaaaatgtggttac 47261904  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 23071742 - 23071699
Alignment:
Q  389 aatatggagaatgaaagtgttgatttggaaaatagaggtgatgt 432  Q
    ||||||||||||||||||||||||  | ||||||||||||||||    
T  23071742 aatatggagaatgaaagtgttgatcagaaaaatagaggtgatgt 23071699  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 375
Target Start/End: Original strand, 9718127 - 9718253
Alignment:
Q  246 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 342  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  9718127 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 9718220  T
Q  343 tgttgatgttgaaattcttgaaaatgtggttac 375  Q
    ||||||||||| | |||||||||||||||||||    
T  9718221 tgttgatgttggagttcttgaaaatgtggttac 9718253  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 375
Target Start/End: Original strand, 15928200 - 15928326
Alignment:
Q  246 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 342  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  15928200 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 15928293  T
Q  343 tgttgatgttgaaattcttgaaaatgtggttac 375  Q
    ||||||||||| | |||||||||||||||||||    
T  15928294 tgttgatgttggagttcttgaaaatgtggttac 15928326  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 23284796 - 23284729
Alignment:
Q  251 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 318  Q
    ||||| ||| |||| |||| |||||||||||| |||||| || |||||||| ||||||||||| ||||    
T  23284796 gagttaattgaatcccaaacaggagctcttgaaaaatttattgtaaaagaaacacaaattcctattga 23284729  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 34546500 - 34546425
Alignment:
Q  272 ggagctcttgataaatttcttataaaagaaccacaaattcctgttgaaaatcagaatgtcggtaatgttaatgttg 347  Q
    |||||||||||||||||| |||||||| ||| |||||||||| | |||||||||||||| | |||||  |||||||    
T  34546500 ggagctcttgataaatttgttataaaaaaacaacaaattcctttcgaaaatcagaatgttgataatgacaatgttg 34546425  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 373
Target Start/End: Complemental strand, 1803524 - 1803400
Alignment:
Q  246 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 342  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||| | ||   |||||||||| |||||||| | |||||      || |||    
T  1803524 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaatatccgcaacaaattcctattgaaaatgaaaatgt------tgataa 1803431  T
Q  343 tgttgatgttgaaattcttgaaaatgtggtt 373  Q
    ||||||||||| | |||||||||||||||||    
T  1803430 tgttgatgttggagttcttgaaaatgtggtt 1803400  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 21741094 - 21741032
Alignment:
Q  251 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcct 313  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || ||||||||  ||||||||||    
T  21741094 gagttaattgaatcccaaacaggagctcttgataaatttattttaaaagaaatacaaattcct 21741032  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 19740409 - 19740350
Alignment:
Q  251 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaatt 310  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||    
T  19740409 gagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaatt 19740350  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 375
Target Start/End: Original strand, 38987991 - 38988111
Alignment:
Q  252 agtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaatgttga 348  Q
    |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||| | | |||||| | |||||      || |||||||||    
T  38987991 agttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcttatcgaaaatgaaaatgt------tgataatgttga 38988084  T
Q  349 tgttgaaattcttgaaaatgtggttac 375  Q
    ||||| | |||||||||||| ||||||    
T  38988085 tgttggagttcttgaaaatgcggttac 38988111  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 40446095 - 40446147
Alignment:
Q  266 caaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 318  Q
    |||| ||||||||||||||| ||| || |||||||| ||||||||||| ||||    
T  40446095 caaacaggagctcttgataattttattgtaaaagaaacacaaattcctattga 40446147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 54577694 - 54577634
Alignment:
Q  251 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattc 311  Q
    ||||| ||| |||| |||| | ||||||||||||||||| || |||||||| |||||||||    
T  54577694 gagttaattgaatcccaaacatgagctcttgataaatttattgtaaaagaaacacaaattc 54577634  T

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