View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_32 (Length: 455)
Name: NF19929_low_32
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_32 |
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| [»] scaffold0734 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 3028521 - 3028331
Alignment:
| Q |
13 |
caaaggaaaagacaaagaagaatggtggtgttttaagagttcttgctgcaatgatatttggtactggttgtggagcattgacagcatttattgtgcttta |
112 |
Q |
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| T |
3028521 |
caaaggaaaaggcaaagaagaatggtggtgttttaagagttcttgctgcaatgatatttgatactggttgtggagcattgacagcatttattgtgcttta |
3028422 |
T |
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| Q |
113 |
tttgtggataatatttgccaataaacattgtgcagtggttccagaaggatgttctatgcaacttttacatgttgagtgtaggaaagttaaa |
203 |
Q |
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| T |
3028421 |
tttgtggacaatatttgccaataaacgttgtgcagtggttccagaaggatgttctatgcaacttttacatgtttagcataggaaagttaaa |
3028331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 24105142 - 24105222
Alignment:
| Q |
40 |
gtgttttaagagttcttgctgcaatgatatttggtactggttgtggagcattgacagcatttattgtgctttatttgtgga |
120 |
Q |
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| T |
24105142 |
gtgttttaagaattcttgctgcaatgatatttggttctggatgtggagcattggcggcgttcaccgtgctttatttgtgga |
24105222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 5919015 - 5919217
Alignment:
| Q |
13 |
caaaggaaaagacaaagaagaatggtggtgttttaagagttcttgctgcaatgatatttggtactggttgtggagcattgacagcatttattgtgcttta |
112 |
Q |
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| T |
5919015 |
caaaggaaaaggcaaagaagaatgattgtgttttaagagttcttgctgcaatgatatttggcactggttgtggagcattgacagcattcactgtgcttta |
5919114 |
T |
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| Q |
113 |
tttgtggataatatttgccaataaacattgtgcagtggttccagaaggatgttctatgcaacttttacatgttgagtgtaggaaagttaaaattgtagta |
212 |
Q |
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| T |
5919115 |
tttgtggacaatctttggcaataaacgtggtgcagttgttccagaaggatgttctatgcaacctttagatgttgagtatagaaaagttaaaattgttgta |
5919214 |
T |
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| Q |
213 |
gat |
215 |
Q |
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||| |
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| T |
5919215 |
gat |
5919217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 5919247 - 5919309
Alignment:
| Q |
216 |
gatcttctttagaaaactatctggtttgaaacttgtttgtaaatttagtaggttttgatctgt |
278 |
Q |
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| T |
5919247 |
gatcttcttgagataactatctggtttgaaacttgtttgtaaatctagtaggttttgatctgt |
5919309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 5919379 - 5919483
Alignment:
| Q |
277 |
gtgtttcttgtatttagtaagttttgctctaaagaaccatctatttannnnnnncttacaatgtctatgttacttaa-ttgagattgaaattaaataaac |
375 |
Q |
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| T |
5919379 |
gtgtttcctgtatttagtaagttttgctcttaagaattatctattt-gttttttcttacaatgtctttgttgatcaatttgagattgaaattaaataaac |
5919477 |
T |
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| Q |
376 |
tctgca |
381 |
Q |
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| T |
5919478 |
tctgca |
5919483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 1892 - 1836
Alignment:
| Q |
381 |
agtaaatacttcttgttttcttatgaatgatgttcaaatttaagtccaattgaagtt |
437 |
Q |
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| T |
1892 |
agtaaatactgcttgttttcttatgaatgatgttcaaattcaagtccaattgaagtt |
1836 |
T |
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