View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_34 (Length: 448)
Name: NF19929_low_34
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 4381066 - 4380641
Alignment:
| Q |
19 |
ctgatctcactcatactctctgtttagggcagacagacaggaaactaggcagaaaattgggactacaatcgcatcaaacaactttagcaactgaagtaga |
118 |
Q |
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| T |
4381066 |
ctgatctcactcatactctctgtttagggcagacagacaggaaactaggcagaaaattgggactacaatcgcatcaaacaactttagcaactgaagtaga |
4380967 |
T |
|
| Q |
119 |
ccttcctgagacctaactttactatactttgtgtttaataagtctagtaccttacaacttttggaacctcatttggcatttttgccataacactcctcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4380966 |
ccttcctgagacctaactttactatactttgtgtttaataagtctagtaccttacaacttttggaacctcatttggcatttttgccataacactcctcct |
4380867 |
T |
|
| Q |
219 |
cctgtcctatattacactacacaaaccacaaatagagtttgataaacaataaaatcattataggtataaaatttgttcatccaattaaacaataatgtag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4380866 |
tctgtcctatattacactacacaaaccacaaatagagtttgataaacaataaaatcattataggtataaaatttgttcatccaattaaacaataatgtag |
4380767 |
T |
|
| Q |
319 |
atgaaaaattatt---taatcacattagtacaatagtacttaaataatgttatagactcgttttttaaccttgatcatctataatttgatttatttgata |
415 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4380766 |
atgaaaaattatttaataatcacattagtacaatagtacttaaataatgttatagactcgttttttaaccttgatcatctataatttgatttatttgata |
4380667 |
T |
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| Q |
416 |
tgatttactattttacattcatctca |
441 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4380666 |
tgatttactattttacattcatctca |
4380641 |
T |
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