View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_low_36 (Length: 425)
Name: NF19929_low_36
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 40826989 - 40826678
Alignment:
| Q |
13 |
gagatcgatgttgcccgcttcaagaatataaagtaatataattttcatgctatagcatgactatatgtatttagtttctttcacnnnnnnnntatattta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
40826989 |
gagatcgatgttgcccgcttcaagaatataaagtaatataattttcatgctatagcatgactatatatatttagtttctttcacaaaaaaaa-atattta |
40826891 |
T |
|
| Q |
113 |
gttgttcatcctataatattattgtatttaataatattagcaagtcattgtgatttgtttgtgttattgagtatggttttatgtgtagcatgagtaacgt |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40826890 |
gttgttcatcctataatattatagtatttaataatattagcaagtcattgtgatttgtttgtgttattgagtatggttttatgtgtagcatgagtaacgt |
40826791 |
T |
|
| Q |
213 |
aatattgtgaagtttgtttgcgtatgatcctatttctattaaaaataatattattagcaagttgtgatttatctggtatggttttacatgaatatattgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40826790 |
aatattgtgaagtttgtttgcgtatgatcctatttctattaaaaataatattattagcaagttgtgatttatctggtatggttttacatgaatatattgt |
40826691 |
T |
|
| Q |
313 |
gtagacttcgtga |
325 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40826690 |
gtagacttcgtga |
40826678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 40826674 - 40826615
Alignment:
| Q |
354 |
ctaaatggtgattactgattttgcagc--ttgtttgaccaattttttattctaatatttg |
411 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40826674 |
ctaaatggtgattactgattttgcagcacttgtttgaccaattttttattctaatatttg |
40826615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University