View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_37 (Length: 419)
Name: NF19929_low_37
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 142 - 383
Target Start/End: Original strand, 18728727 - 18728968
Alignment:
| Q |
142 |
tattataattattgaggaaaattactcttcaaattcatgaaattgcttattctcttgtatcagatgcgtcagttaacaatcgcttgacattttttaacag |
241 |
Q |
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| T |
18728727 |
tattataattattgaggaaaattactcttcaaactcatgaaattgcttattctcttgtatcagatgcatcagttaacaaccgcttggcatttttcaacag |
18728826 |
T |
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| Q |
242 |
ttgttagatgtccgctgacacttttaataactgttgaattgacttaaaaattgattgaaccaattttaaaaatgtcaacaacagttaattgttgttgaaa |
341 |
Q |
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| T |
18728827 |
ttgttagatgtccgctgacacttttaataactgatgaattgacttaaaaattgattgaaccaatcttaaaaatgtcagcaacaattaactgttgttgaaa |
18728926 |
T |
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| Q |
342 |
aatattgaacagcagttaactgccgttgatataaaagaatga |
383 |
Q |
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| T |
18728927 |
aatattaaacggtagttaactgccgctgatataagagaatga |
18728968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 18726428 - 18726564
Alignment:
| Q |
15 |
tatacataaaatcaattgtgtaaaatactgttgttgggtcccattcagaatggtacagaagataggtagctcagttactgaatcacagtgcacggcatat |
114 |
Q |
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| T |
18726428 |
tatacataaaatcaattgtgtaaaatactgttgttgggtcccattcagaatggtacagaagataggtagctcagttactgaatcacagtgcacggcatat |
18726527 |
T |
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| Q |
115 |
gcccctcctgttctgccaccacaatagtattataatt |
151 |
Q |
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| T |
18726528 |
gcccctcctgtcctgccaccacaatagtattataatt |
18726564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 12116582 - 12116497
Alignment:
| Q |
287 |
aaaaattgattgaaccaattttaaaaatgtcaacaacagttaattgttgttgaaaaatattgaacagcagttaactgccgttgata |
372 |
Q |
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| T |
12116582 |
aaaaaatgattgaaccgattttaaaagtgccagcaacagttaactaccgctgaaaattatcgaacggcagttaactgccgctgata |
12116497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 375
Target Start/End: Complemental strand, 12124745 - 12124653
Alignment:
| Q |
282 |
gacttaaaaattgattgaaccaattttaaaaatgtcaacaacagttaattgttgttgaaaaatattgaacagcagttaactgccgttgatataa |
375 |
Q |
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| T |
12124745 |
gacttaaaagctgattgaactgattttaaaagtgtcagcgacagttaacggtcgctgaaaaatattgaacaaca-ttaactgctgctgatataa |
12124653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 21488926 - 21488811
Alignment:
| Q |
255 |
gctgacacttttaataactgttgaattgacttaaaaattgattgaaccaattttaaaaatgtcaacaacagttaattgttgttgaaaaatattgaacagc |
354 |
Q |
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| T |
21488926 |
gctgacacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgttagcgacaattaattgccgcagaaaaatgttaaacgac |
21488827 |
T |
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| Q |
355 |
agttaactgccgttga |
370 |
Q |
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| T |
21488826 |
agttaactgccgttga |
21488811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 1944805 - 1944758
Alignment:
| Q |
274 |
gttgaattgacttaaaaattgattgaaccaattttaaaaatgtcaaca |
321 |
Q |
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| T |
1944805 |
gttgaattgatttaaaaaatgattgaaccaattataaaaatgccaaca |
1944758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 25258075 - 25258148
Alignment:
| Q |
256 |
ctgacacttttaataactgttgaattgacttaaaaattgattgaaccaattttaaaaatgtcaacaacagttaa |
329 |
Q |
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| T |
25258075 |
ctgacacttttaagatcggttgaaccgacttaaaaagtgattgaactgatcttaaaagtgtcagcaacagttaa |
25258148 |
T |
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