View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_38 (Length: 414)
Name: NF19929_low_38
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 83 - 320
Target Start/End: Complemental strand, 2693574 - 2693345
Alignment:
| Q |
83 |
tacccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgtacttcttcagcctgacctgcataaaaattaat |
182 |
Q |
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| T |
2693574 |
tacccaaaaagcaggcaaagcacataacatattcaaaggccccccatcagcacctctcatttccatgtacttctttagcctgacctgcataaaaattaat |
2693475 |
T |
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| Q |
183 |
acatgtcctacttaacttagtcttagtgtactgaaattatatagttaaaaatgtaacaccgagactttcggcatttcagattggatgtgtcaatgtgtgt |
282 |
Q |
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| T |
2693474 |
acatgtcctacttaacttagtcttagtgtactgaaattatatggttagaaatgtaacactgagactttcggtatttcagattggat--------gtgtgc |
2693383 |
T |
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| Q |
283 |
caagtgtctgacacatattggtgtcgacattgaacatt |
320 |
Q |
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| T |
2693382 |
aaagtgtccgacacatattggtgttgacattgaacatt |
2693345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 2685689 - 2685614
Alignment:
| Q |
76 |
gatgaattacccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgta |
151 |
Q |
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| T |
2685689 |
gatgaattacccaaaaagctggtggagcacatagcatgctctgagggaccacatcagcacctctcatttccatgta |
2685614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 2693326 - 2693228
Alignment:
| Q |
306 |
tcgacattgaacatttgacacaagtgattactttcaactacttctattatggatactatctttgttgtgtctg----atgtccatatctatgtcaatgtt |
401 |
Q |
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| T |
2693326 |
tcgacattcaacatt-gacacaagtgattacattcagttacttctatttttgataataacaatgttgtgtctgtccaatgtccatatctatgccaatgtt |
2693228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 40924315 - 40924400
Alignment:
| Q |
84 |
acccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgtacttcttcagcctgacctg |
169 |
Q |
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|||||||| || || | |||||||||| || || ||||||| ||||||||||||||||| |||| ||| |||| ||||| ||||| |
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| T |
40924315 |
acccaaaatgctggtaaagcacataaccttctccaaggccctccatcagcacctctcatctccaaatacctctttagcctaacctg |
40924400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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