View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_4 (Length: 755)

Name: NF19929_low_4
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_4
NF19929_low_4
[»] chr2 (7 HSPs)
chr2 (379-737)||(1242656-1242999)
chr2 (1-203)||(1242280-1242480)
chr2 (27-127)||(3258037-3258136)
chr2 (379-514)||(5051306-5051441)
chr2 (143-203)||(3257988-3258047)
chr2 (40-127)||(5050983-5051069)
chr2 (379-514)||(36592822-36592957)
[»] chr7 (11 HSPs)
chr7 (6-203)||(40074611-40074806)
chr7 (13-188)||(15121814-15121987)
chr7 (5-190)||(26199186-26199368)
chr7 (379-506)||(40074310-40074437)
chr7 (18-131)||(5893329-5893441)
chr7 (379-514)||(36934161-36934296)
chr7 (141-203)||(47588718-47588779)
chr7 (379-514)||(26199702-26199837)
chr7 (140-203)||(36933926-36933988)
chr7 (397-514)||(5892950-5893067)
chr7 (5-106)||(36933798-36933899)
[»] chr4 (19 HSPs)
chr4 (13-203)||(23532911-23533101)
chr4 (13-203)||(50589133-50589324)
chr4 (6-189)||(8817145-8817330)
chr4 (6-127)||(28149665-28149785)
chr4 (18-203)||(14791810-14791988)
chr4 (383-514)||(14792158-14792289)
chr4 (13-200)||(51407668-51407859)
chr4 (383-514)||(12888167-12888298)
chr4 (379-514)||(18357013-18357148)
chr4 (379-514)||(18431659-18431794)
chr4 (13-124)||(12887844-12887954)
chr4 (140-203)||(28149615-28149678)
chr4 (5-91)||(37320723-37320808)
chr4 (6-106)||(39051741-39051840)
chr4 (379-514)||(51407335-51407468)
chr4 (6-92)||(24958269-24958355)
chr4 (13-102)||(3914923-3915012)
chr4 (379-512)||(3915235-3915368)
chr4 (49-94)||(55728190-55728235)
[»] chr3 (9 HSPs)
chr3 (26-203)||(51057145-51057326)
chr3 (379-514)||(25498758-25498893)
chr3 (62-203)||(25498448-25498590)
chr3 (379-514)||(51056834-51056968)
chr3 (75-128)||(17114057-17114109)
chr3 (379-474)||(38258744-38258839)
chr3 (379-514)||(49358497-49358632)
chr3 (141-203)||(17113980-17114041)
chr3 (38-95)||(52984866-52984923)
[»] chr6 (6 HSPs)
chr6 (379-514)||(22696464-22696599)
chr6 (20-124)||(34503371-34503473)
chr6 (18-203)||(22696112-22696296)
chr6 (145-201)||(14287360-14287416)
chr6 (142-189)||(11444808-11444855)
chr6 (379-454)||(24045613-24045688)
[»] chr1 (6 HSPs)
chr1 (5-193)||(27109401-27109585)
chr1 (6-131)||(39629191-39629315)
chr1 (379-512)||(27109768-27109901)
chr1 (48-203)||(32947238-32947391)
chr1 (441-514)||(32946941-32947014)
chr1 (43-95)||(14351756-14351808)
[»] chr8 (8 HSPs)
chr8 (11-203)||(19554600-19554788)
chr8 (52-189)||(19411660-19411793)
chr8 (5-124)||(20516252-20516370)
chr8 (379-514)||(38149525-38149660)
chr8 (77-123)||(5324219-5324264)
chr8 (420-514)||(20518976-20519070)
chr8 (379-433)||(32919597-32919651)
chr8 (13-66)||(38149897-38149950)
[»] chr5 (7 HSPs)
chr5 (13-203)||(27632533-27632721)
chr5 (80-198)||(33757758-33757879)
chr5 (5-203)||(36608206-36608400)
chr5 (6-203)||(9435985-9436182)
chr5 (379-514)||(33758088-33758221)
chr5 (379-514)||(9436337-9436472)
chr5 (13-92)||(7269982-7270061)
[»] scaffold0005 (2 HSPs)
scaffold0005 (383-514)||(47442-47573)
scaffold0005 (18-203)||(47743-47921)
[»] scaffold0015 (1 HSPs)
scaffold0015 (5-203)||(79531-79728)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 379 - 737
Target Start/End: Original strand, 1242656 - 1242999
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1242656 aatccaccttcacagcagcaacatcatcgatccatctcgacaaaccaccagataatgtagtagtcgaaccggatgaaaatgttatgatcgaacccagttg 1242755  T
Q  479 ttgaagacaaaccgacacctcctcacaccacc-aaaatattcaatttcttggttttgatcagtggtgttttgttacagtcacaataaaataagttcatat 577  Q
    ||||| |   ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1242756 ttgaacatccaccaacacctcctcacgccaccaaaaatattcaatttcttggttttgatcagtggtgttttgttacagtcacaataaaataagttcatat 1242855  T
Q  578 taaaaagtggtcatgtagagtatttattttggtttttattttgatggattaacatcaaatattttatgaggaatgctagtaaagtagaacacattttcta 677  Q
    |||||||||||||||| |||||            ||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||    
T  1242856 taaaaagtggtcatgtggagta------------tttattttgatggattaacatcaaatattttatgag---tgttagtaaagtagaacacattttcta 1242940  T
Q  678 agacacnnnnnnnattggttgaaattaaaatggtacacatgaaatatgtaggctccacat 737  Q
    | ||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  1242941 acacac-ttttttattggttgaaattaaaatggtacacatgaaatatgtaggctccacat 1242999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1242280 - 1242480
Alignment:
Q  1 aaggcaaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  1242280 aaggcaaaattgaattgattaaaatcacaatgagttctaaccagcacaaagaatgctagactaggattcctaaggtagcaacatacaaaggaaaacaaaa 1242379  T
Q  101 gttgtatccaaaaccctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgct 200  Q
    |||||| ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  1242380 gttgtacccaaaaccctcacccaacatacat--aaaaaaccctcaaccaacatcacaagctgccacaaaaaataacttcaaccacctacaatctgttgct 1242477  T
Q  201 cgc 203  Q
    |||    
T  1242478 cgc 1242480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 3258136 - 3258037
Alignment:
Q  27 acaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccctcacccaaca 126  Q
    ||||||| | |||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  3258136 acaatgactcctaaccagcacaaggaatgctagattaggagtccaaaagtagcaacatacaaaggaaaataaaagttgtat-caaaaccatcaaccaaca 3258038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 5051306 - 5051441
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||  ||| ||||| | || |||||||  || ||||||||||||||||   ||| ||| |||||||||| || ||||||||||||||||   |    
T  5051306 aatccacctttgcagcagcaaaaccaacgatccacatcaacaaaccaccatataacagagtagtcaaaccggatgagaaggttatgatcgaacccaaccg 5051405  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  ||||||||||||||||||||||||||    
T  5051406 ttgaagacccaccgacacctcctcacaccaccaaaa 5051441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 3258047 - 3257988
Alignment:
Q  143 tcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||| || |||||||||    
T  3258047 tcaaccaacatcacaagctgccaca-aaaacaacttccaccacctacattccgctgctcgc 3257988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 5050983 - 5051069
Alignment:
Q  40 accagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccctcacccaacat 127  Q
    ||||||| |||||||| ||| ||| || || ||| ||||||||||||||||||||| |||||||| | |||| |||||||||||||||    
T  5050983 accagcacaaggaatgataggttaagagtcgtaaagtagcaacatacaaaggaaaacaaaagttgca-ccaacaccctcacccaacat 5051069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 36592822 - 36592957
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||||  |||| || ||||||||||  |||||||||||||| ||||   ||| | | |||||| ||| || ||||||||||||||||   |    
T  36592822 aatccaccttcacaacagcaccaccatcgatccacgtcgacaaaccaccagataacagagtagccaaaccgggtgagaaggttatgatcgaacccaacag 36592921  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  |||| | | |||||||||||||||||    
T  36592922 ttgaagacccaccggcccttcctcacaccaccaaaa 36592957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 3e-47; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 40074806 - 40074611
Alignment:
Q  6 aaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgt 105  Q
    ||||| ||||| |||||||| ||||||||| |||||| ||| || ||||| |||| |||||||| ||||||||||||||| ||||||||| |||| ||||    
T  40074806 aaaatagaatttattaaaatcacaatgagtcctaacctgcaaaatgaatgttagactaggattcgtaaggtagcaacatataaaggaaaacaaaaattgt 40074707  T
Q  106 atccaaaaccctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    | ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||    
T  40074706 acccaaaaccctcacccaacatacat--agaaaaccctcaaccaacatcacaagctgccacaaaaaacaacttccaccaacaacaatccgctgctcgc 40074611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 15121987 - 15121814
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaa 112  Q
    |||| |||||||| |||| || | || ||||||| ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||    
T  15121987 aatttattaaaatcacaaagaatcctgaccagcacaaggaatgctagactaggagtcgtaaggtagcaacatacaaaggaaaataaaagttgta-ccaaa 15121889  T
Q  113 accctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccaccta 188  Q
    |||||||||||| || |||        |||||||||||||||||||  |||||| |||||||||||| | ||||||    
T  15121888 accctcacccaaaattcat-aaaaaaaccctcaaccaacatcacaaattgccaccaaaaacaacttccaacaccta 15121814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 26199186 - 26199368
Alignment:
Q  5 caaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttg 104  Q
    |||||| ||||| |||||||| ||||||| | ||||| |||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||||||  ||    
T  26199186 caaaatggaatttattaaaattacaatgaatcctaacaagcacaaggaatgctagactaggagtcgtaaagtagcaatatacaaaggaaaataaaaactg 26199285  T
Q  105 tatccaaaaccctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctaca 190  Q
    || ||||||||||||||||||||||||         ||||||||||| |||||||||||||| | |||||||||| ||||||||||    
T  26199286 ta-ccaaaaccctcacccaacatacataaaaaaaa-cctcaaccaacgtcacaagctgccac-acaaacaacttccaccacctaca 26199368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 379 - 506
Target Start/End: Complemental strand, 40074437 - 40074310
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    |||||||||||| || ||||||| |||||||||| ||||||||||||||| ||||  |||| |||||||||||||| || ||| ||||||||||||||      
T  40074437 aatccaccttcagagcagcaacaccatcgatccacctcgacaaaccaccagataacatagtagtcgaaccggatgagaaggttctgatcgaacccagtca 40074338  T
Q  479 ttgaagacaaaccgacacctcctcacac 506  Q
    ||| ||||  ||||||||||||||||||    
T  40074337 ttggagacccaccgacacctcctcacac 40074310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 5893441 - 5893329
Alignment:
Q  18 attaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccct 117  Q
    |||||||| ||||||| | |||||||||| ||||||| ||||| ||||| || ||| |||||||||||||||||||||||||||||||| |||||| |||    
T  5893441 attaaaatcacaatgaatcctaaccagcacaaggaatactagaataggagtcgtaaagtagcaacatacaaaggaaaataaaagttgta-ccaaaatcct 5893343  T
Q  118 cacccaacatacat 131  Q
    ||||||||| ||||    
T  5893342 cacccaacaaacat 5893329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 36934161 - 36934296
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    |||||||| |||||| |||||||||||| |||||    | |||||||||| |||||  ||| |||||||| ||||| || ||| ||||||||||||   |    
T  36934161 aatccaccatcacagcagcaacatcatcaatccacactggcaaaccaccagataatagagtagtcgaaccagatgagaaggttctgatcgaacccaaccg 36934260  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  ||||||||||||||||||||||||||    
T  36934261 ttgaagacccaccgacacctcctcacaccaccaaaa 36934296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 47588718 - 47588779
Alignment:
Q  141 cctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  47588718 cctcaaccaacatcacaagctgccac-aaaaacaacttccaccacctacattctgctgctcgc 47588779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 26199702 - 26199837
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||||  | ||||| ||||||| ||  |||||||||||||| |||||  ||| |||||||| ||||| || ||  ||||||||||||        
T  26199702 aatccaccttcacaacaacaacaccatcgatacacatcgacaaaccaccaaataatagagtagtcgaacctgatgagaaggtactgatcgaacccaacca 26199801  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  |||| ||| |||||||||||||||||    
T  26199802 ttgaagacccaccgtcacatcctcacaccaccaaaa 26199837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 36933926 - 36933988
Alignment:
Q  140 ccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||||||| ||  ||||||||    
T  36933926 ccctcaaccaacatcacaagctgccac-agaaacaacttccaccacctacattcaactgctcgc 36933988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 514
Target Start/End: Complemental strand, 5893067 - 5892950
Alignment:
Q  397 caacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttgttgaagacaaaccgacac 496  Q
    ||||| |||| |||||  |||||||||||||| ||||   |||  ||||||||||||| || ||| |||| |||||||   |||||||||  ||||||||    
T  5893067 caacaccatcaatccacatcgacaaaccaccagataacagagtaatcgaaccggatgagaaggttctgattgaacccaaccgttgaagacccaccgacac 5892968  T
Q  497 ctcctcacaccaccaaaa 514  Q
     |||||||||||| ||||    
T  5892967 ttcctcacaccacaaaaa 5892950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 36933798 - 36933899
Alignment:
Q  5 caaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttg 104  Q
    |||||| ||||| |||||||| ||||||| | ||||| |||| ||||||||||||  ||||| || ||| ||||||| |||||||  | || ||||||||    
T  36933798 caaaatggaatttattaaaatcacaatgaatcctaactagcacaaggaatgctaggataggagtcgtaaagtagcaaaatacaaaaaagaacaaaagttg 36933897  T
Q  105 ta 106  Q
    ||    
T  36933898 ta 36933899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 23532911 - 23533101
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaa 112  Q
    |||| |||||||| ||||||||| |||||||||| |||||||||||||||| ||||| | | |||| | ||||||||||||||||||| ||||| |||||    
T  23532911 aatttattaaaatcacaatgagtcctaaccagcataaggaatgctagattatgattcgttaagtagtatcatacaaaggaaaataaaatttgtacccaaa 23533010  T
Q  113 accctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||||||||||||| ||||         | |||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||    
T  23533011 accctcacccaacgtacaaaaaaaaaactctcaaccaacatcataagttgccacaaaaaacaacttccaccacctacaatatgctgctcgc 23533101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 50589133 - 50589324
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaa 112  Q
    |||| |||||||| ||||||||| |||||||||| ||| ||||||||| |||||||| | | |||||||| ||||| | ||||||||| ||||| |||||    
T  50589133 aatttattaaaatcacaatgagtcctaaccagcataagaaatgctagactaggattcgttaagtagcaacgtacaaggaaaaataaaatttgtacccaaa 50589232  T
Q  113 accctcacccaacatacat-nnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    |||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  50589233 accctcacccaacatacataaaagaaaaacctcaaccaacatcacaagctgccacaaaaaacaacttccaccacccacaatccgctgctcgc 50589324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 8817145 - 8817330
Alignment:
Q  6 aaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgt 105  Q
    ||||| ||||| |||||||| ||||| | | ||||| || | |||||||| |||| ||||| || |||  ||||||||||||||||||||||||||||||    
T  8817145 aaaatggaatttattaaaatcacaataactcctaactagtataaggaatgttagactaggagtcgtaaaatagcaacatacaaaggaaaataaaagttgt 8817244  T
Q  106 atccaaaaccctcacccaacatac--atnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctac 189  Q
    | ||||||||||||||||| ||||  |         |||||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  8817245 acccaaaaccctcacccaaaatacaaaaaaataaaaccctcaaccaacatcacaagctgccataaaaaacaatttccaccacctac 8817330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 28149785 - 28149665
Alignment:
Q  6 aaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgt 105  Q
    ||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||| ||||| |  |  || ||||||||||||||||||| |||||||||    
T  28149785 aaaattgaatttattaaaatcacaatgagtcctaaccagcacaaggaatgctagactaggagttttgggg-agcaacatacaaaggaaaacaaaagttgt 28149687  T
Q  106 atccaaaaccctcacccaacat 127  Q
    | ||||||||||||||||||||    
T  28149686 acccaaaaccctcacccaacat 28149665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 14791810 - 14791988
Alignment:
Q  18 attaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccct 117  Q
    |||||||| ||||||| | ||||| |||| ||||| |||||||  |||| ||  || |||||||||||    |||||| |||||||||| |||||||| |    
T  14791810 attaaaatcacaatgaatcctaacaagcacaaggagtgctagacaaggagtcgaaaagtagcaacata----ggaaaacaaaagttgta-ccaaaacctt 14791904  T
Q  118 cacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||||||||||||||        ||||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||    
T  14791905 cacccaacatacataaaaaac-ccctcaaccaacatcacaagctgccac-aaaaacaacttccaccacctacattccgctgctcgc 14791988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 14792158 - 14792289
Alignment:
Q  383 caccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttgttga 482  Q
    ||||||||||| ||||||| ||||||||||  ||||||| |||||| ||||   ||| |||||||||||||| |  ||||||||||||||||   |||||    
T  14792158 caccttcacagcagcaacaccatcgatccacatcgacaacccaccagataacagagtagtcgaaccggatgagatagttatgatcgaacccaaccgttga 14792257  T
Q  483 agacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||  ||||||||| ||||||||||||||||    
T  14792258 agacccaccgacaccgcctcacaccaccaaaa 14792289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 51407859 - 51407668
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaa 112  Q
    |||| |||||||| ||||| | | |||||||||| ||||||||||||| ||||| || |||  ||||||||||||||| |||||||||||| || | |||    
T  51407859 aatttattaaaatcacaataactcctaaccagcataaggaatgctagactaggagtcgtaaaatagcaacatacaaagaaaaataaaagttatacctaaa 51407760  T
Q  113 accctcacccaacatac----atnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgct 200  Q
    |||||||||||| ||||    |         |||||||||||||||||||| ||||| ||||||||| ||  ||||||||| ||| ||||||    
T  51407759 accctcacccaaaatacaaaaaaaaataaaaccctcaaccaacatcacaagttgccataaaaaacaattttcaccacctacgatccgctgct 51407668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 12888167 - 12888298
Alignment:
Q  383 caccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttgttga 482  Q
    ||||||||||  ||||||| ||||||||||  |||||||||||||| ||||   ||| |||||| ||||||| || | | ||||||||||||   |||||    
T  12888167 caccttcacaacagcaacaccatcgatccacatcgacaaaccaccagataacagagtagtcgaatcggatgagaaggatctgatcgaacccaaccgttga 12888266  T
Q  483 agacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||  ||||||||||||||||||||||||||    
T  12888267 agacccaccgacacctcctcacaccaccaaaa 12888298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 18357013 - 18357148
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||| | ||| ||||||||||||||  |||||||| ||| ||||||   ||| |||||||||||||| ||  || ||||||||||||   |    
T  18357013 aatccaccttcacggcagccacatcatcgatccacatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccg 18357112  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  |||| |||||||||||||||||||||    
T  18357113 ttgaagacccaccgtcacctcctcacaccaccaaaa 18357148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 379 - 514
Target Start/End: Complemental strand, 18431794 - 18431659
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||| | ||| ||||||||||||||  |||||||| ||| ||||||   ||| |||||||||||||| ||  || ||||||||||||   |    
T  18431794 aatccaccttcacggcagccacatcatcgatccacatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccg 18431695  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  |||| |||||||||||||||||||||    
T  18431694 ttgaagacccaccgtcacctcctcacaccaccaaaa 18431659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 12887844 - 12887954
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaa 112  Q
    |||| |||||||| ||||||| | ||||| |||| |||||||| |||| ||||  || ||| ||||||||||| ||||||||| |||||||||| |||||    
T  12887844 aatttattaaaatcacaatgaatcctaacaagcacaaggaatggtagactaggggtcgtaaagtagcaacatataaaggaaaacaaaagttgta-ccaaa 12887942  T
Q  113 accctcacccaa 124  Q
    ||| ||||||||    
T  12887943 accttcacccaa 12887954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 28149678 - 28149615
Alignment:
Q  140 ccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||    
T  28149678 ccctcacccaacatcacaagctgtcacaaaaaacaacttccaccacctacaatcagttgctcgc 28149615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 37320723 - 37320808
Alignment:
Q  5 caaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaagg 91  Q
    |||||| ||||| |||||||| ||||||||| |||||||| | ||||| ||||||| ||||| || |||| ||||||||||||||||    
T  37320723 caaaatagaatttattaaaatcacaatgagtcctaaccagtacaaggagtgctagactaggaatcgtaag-tagcaacatacaaagg 37320808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 39051741 - 39051840
Alignment:
Q  6 aaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgt 105  Q
    ||||| ||||| |||||||| ||||||| |||||||||||| |||||||| ||||||| || ||  ||  ||| ||||||||||| |||| |||||||||    
T  39051741 aaaatggaatttattaaaatcacaatgaattctaaccagcacaaggaatgttagattatgagtcacaaaatag-aacatacaaagaaaaacaaaagttgt 39051839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 514
Target Start/End: Complemental strand, 51407468 - 51407335
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||| ||||||  ||||||| ||||||||||  ||||||||||| || ||||   ||| ||| ||| |||||| || ||| ||||||||||||   |    
T  51407468 aatccactttcacaacagcaacaccatcgatccacttcgacaaaccatcagataac--agtagtccaactggatgagaaggttctgatcgaacccaaccg 51407371  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  || | |||||||||||||||||||||    
T  51407370 ttgaagacccactggcacctcctcacaccaccaaaa 51407335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 24958355 - 24958269
Alignment:
Q  6 aaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaagga 92  Q
    ||||| ||||| ||||||||  |||||| | || ||||||| ||||||||||||  ||||| || ||| ||||||||||||||||||    
T  24958355 aaaatggaatttattaaaattgcaatgaatcctgaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaagga 24958269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 3914923 - 3915012
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagt 102  Q
    |||| |||||||| ||| ||| | ||||| |||| ||||| ||| ||||||||| ||  || ||||||||||||||||||||| ||||||    
T  3914923 aatttattaaaatcacactgaatcctaacaagcacaaggagtgccagattaggagtcgaaaagtagcaacatacaaaggaaaacaaaagt 3915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 512
Target Start/End: Original strand, 3915235 - 3915368
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    |||||||||||| || ||||||| ||||||||||  |||| ||||||||| ||||   | | |||||||| ||||| || ||| | ||||||||||   |    
T  3915235 aatccaccttcatagcagcaacaccatcgatccacgtcgataaaccaccagataacagaatagtcgaaccagatgagaaggttctaatcgaacccaaccg 3915334  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaa 512  Q
     ||| ||  ||| |||||||||||||||||||||    
T  3915335 ctgaggatcaactgacacctcctcacaccaccaa 3915368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 55728190 - 55728235
Alignment:
Q  49 aggaatgctagattaggattcctaaggtagcaacatacaaaggaaa 94  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||    
T  55728190 aggaatgctagattaggaatattaaagtagcaacatacaaaggaaa 55728235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 51057326 - 51057145
Alignment:
Q  26 gacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtat----ccaaaaccctcacc 121  Q
    ||||||||||  ||||||||| |||||||| |||| ||||||||  ||||||||||||||||||| |||| ||||||||||     ||||||||||||||    
T  51057326 gacaatgagtcataaccagcacaaggaatgttagactaggattcgaaaggtagcaacatacaaagaaaaacaaaagttgtacgtgcccaaaaccctcacc 51057227  T
Q  122 caacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||||||||||        || ||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||    
T  51057226 caacatacataaaaaaaaccatcaaccaacatcacaagctaccacaaaaaacaatttccaccacctgcaatctgctgctcgc 51057145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 25498758 - 25498893
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||||  |||||||||||| |||||  |||||||||||| | |||||  ||| ||||||||||||||||| ||| |||||||| |||   |    
T  25498758 aatccaccttcacaacagcaacatcatcaatccacatcgacaaaccactagataatagagtagtcgaaccggatgaaaaggttctgatcgaaaccaaccg 25498857  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  ||||||||||||||||||||| ||||    
T  25498858 ttgaagacccaccgacacctcctcacaccacaaaaa 25498893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 25498448 - 25498590
Alignment:
Q  62 taggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccctcacccaacatacat---nnnnnnnnccctcaaccaacatcacaa 158  Q
    ||||| || ||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||| ||            ||| ||||||  ||||||    
T  25498448 taggagtcataaagtagcaacatacaaaggaaaataaaagttgta-ccaaaacccttactcaacatatataaaagaaaaaaaccttaaccaatgtcacaa 25498546  T
Q  159 gctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||    
T  25498547 gctgccac-aaaaacaacttccaccacctacattctgctgctcgc 25498590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 379 - 514
Target Start/End: Complemental strand, 51056968 - 51056834
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||| | || |||||| ||||||||  |||||||||||||| ||||  ||||  || || ||| ||| || ||||||||||||| ||   |    
T  51056968 aatccaccttcactgcagtaacatcgtcgatccacatcgacaaaccaccagataacatagtaatcaaatcgggtgagaaggttatgatcgaactcaaccg 51056869  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  ||| ||||||||||||||||||||||    
T  51056868 ttgaagac-caccaacacctcctcacaccaccaaaa 51056834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 17114109 - 17114057
Alignment:
Q  75 gtagcaacatacaaaggaaaataaaagttgtatccaaaaccctcacccaacata 128  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||||||||||    
T  17114109 gtagcaacatacaaaggaaaacaaaagttgt-cccaaaaccctcacccaacata 17114057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 474
Target Start/End: Original strand, 38258744 - 38258839
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaaccca 474  Q
    |||||||||||| || | ||||| |||||| |||  | |||||||||||| |||||   || |||||||||||||| || ||| ||||||||||||    
T  38258744 aatccaccttcatagcatcaacaccatcgacccacatagacaaaccaccagataatagggtagtcgaaccggatgagaaggttctgatcgaaccca 38258839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 49358497 - 49358632
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||| ||  ||||||| |||| |||||| ||||||| |||||| ||||   ||| |||||| | || || || ||| ||||||||||||  |     
T  49358497 aatccaccttcgcatcagcaacaccatcaatccatatcgacaatccaccagataacagagtagtcgaatcagacgagaaggttctgatcgaacccaacta 49358596  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  |||||||||| || ||||||| ||||    
T  49358597 ttgaagacccaccgacaccttctaacaccacaaaaa 49358632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 17114041 - 17113980
Alignment:
Q  141 cctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||||||||||| |||||||||||||| |||| ||||||| || ||||||| || |||||||||    
T  17114041 cctcaaccaacgtcacaagctgccac-aaaagcaacttccactacctacattccgctgctcgc 17113980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 52984923 - 52984866
Alignment:
Q  38 taaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaa 95  Q
    |||| |||| ||||||||||||||||||| || ||| ||| |||||||||||| ||||    
T  52984923 taacgagcataaggaatgctagattaggaatcttaaagtaacaacatacaaagaaaaa 52984866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 22696464 - 22696599
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||  ||| ||||||||||||||||| ||||||||||||||||   |    
T  22696464 aatccaccttcacagcagcaacaccatcgatccatatcgacaaaccaccagataatagagtagtcgaaccggatgaaaaggttatgatcgaacccaaccg 22696563  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  |||  |||||||||||||||||||||    
T  22696564 ttgaagacccaccagcacctcctcacaccaccaaaa 22696599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 34503473 - 34503371
Alignment:
Q  20 taaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccctca 119  Q
    |||||| ||||||| | |||||||||||||||||||||||  ||||| || ||| |||||||||||||| |||||| |||||||||| |||||| |||||    
T  34503473 taaaatcacaatgaatcctaaccagcagaaggaatgctaggctaggagtcgtaaagtagcaacatacaatggaaaacaaaagttgta-ccaaaa-cctca 34503376  T
Q  120 cccaa 124  Q
    |||||    
T  34503375 cccaa 34503371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 22696112 - 22696296
Alignment:
Q  18 attaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccct 117  Q
    |||||||| ||||||| |  || |||| | ||||||||||||| || || |  ||| ||||||||||||||| ||||| |||||||||| ||||||||||    
T  22696112 attaaaatcacaatgaatcatatccagtacaaggaatgctagactaagagttgtaaagtagcaacatacaaaagaaaacaaaagttgta-ccaaaaccct 22696210  T
Q  118 cacccaacatacatnnnnnnnnc-cctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    |||||| |||||||        | ||| ||||||  ||||||| ||||| ||||||||||||| |||||||||| | || |||||||    
T  22696211 cacccaccatacattaaaaaaacaccttaaccaatgtcacaagttgcca-aaaaaacaacttccaccacctacattttgttgctcgc 22696296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 14287360 - 14287416
Alignment:
Q  145 aaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctc 201  Q
    ||||||||||||||||| |||| |||| ||||||| |||||||||| || |||||||    
T  14287360 aaccaacatcacaagctaccaccaaaatcaacttccaccacctacattccgctgctc 14287416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 11444855 - 11444808
Alignment:
Q  142 ctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctac 189  Q
    |||||| ||||||||||| ||||||| ||||||||||| |||||||||    
T  11444855 ctcaactaacatcacaagttgccacataaaacaacttccaccacctac 11444808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 454
Target Start/End: Complemental strand, 24045688 - 24045613
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatga 454  Q
    ||||||||||||||  ||||| |||||||||||||   |||||||||||| ||||   ||| ||||||||||||||    
T  24045688 aatccaccttcacaacagcaatatcatcgatccatacggacaaaccaccagataacagagtagtcgaaccggatga 24045613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 27109401 - 27109585
Alignment:
Q  5 caaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttg 104  Q
    |||||| ||||| |||||||| ||||||||| |||||||||| ||| |||||||||  |||| || || |||| | ||||||||||||||| ||||||||    
T  27109401 caaaatagaatttattaaaatcacaatgagtcctaaccagcacaagaaatgctagacaaggagtcgta-ggtaactacatacaaaggaaaacaaaagttg 27109499  T
Q  105 tatccaaaaccctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatc 193  Q
    ||||||||| |||||||||||||||||        |||||||||| ||||||||| || || ||||||||||||| |||||||||||||    
T  27109500 tatccaaaatcctcacccaacatacat---aaaaaccctcaaccatcatcacaagttgtcataaaaaacaacttccaccacctacaatc 27109585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 39629191 - 39629315
Alignment:
Q  6 aaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgt 105  Q
    ||||| ||||| |||||||| ||||||| | |||||||||| |||||||||||||| || | || ||| ||||||||||||||| |||||||||||||||    
T  39629191 aaaatggaatttattaaaatcacaatgattcctaaccagcacaaggaatgctagatcagaagtcgtaaagtagcaacatacaaaagaaaataaaagttgt 39629290  T
Q  106 atccaaaaccctcacccaacatacat 131  Q
    | ||||||||||||||||||||||||    
T  39629291 a-ccaaaaccctcacccaacatacat 39629315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 379 - 512
Target Start/End: Original strand, 27109768 - 27109901
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||||| ||||||| ||||||||||  |||||||||||||| ||||   ||| |||||||||||||| |||||| |||||||||| |   |    
T  27109768 aatccaccttcacagcagcaacaccatcgatccacatcgacaaaccaccagataacagagtagtcgaaccggatgagaatgttctgatcgaaccaaaccg 27109867  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaa 512  Q
    ||||||||  |||| |||||||||||||||||||    
T  27109868 ttgaagacccaccggcacctcctcacaccaccaa 27109901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 32947391 - 32947238
Alignment:
Q  48 aaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccctcacccaacatacatnnnnnnnnccctcaac 147  Q
    |||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||||  |||||| ||||| |||||||||        ||||||||    
T  32947391 aaggaaggctagattaggagtcgtaaagtagcaacatacaaaggaaaataaaagttgtat-taaaaccttcacctaacatacataaagaaaaccctcaac 32947293  T
Q  148 caacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    |||| ||||||||||| || |||||||||||| |||| |||||  | |||||||||    
T  32947292 caacgtcacaagctgctac-aaaaacaacttccaccatctacatcccgctgctcgc 32947238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 441 - 514
Target Start/End: Complemental strand, 32947014 - 32946941
Alignment:
Q  441 gtcgaaccggatgaaaatgttatgatcgaacccagttgttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    |||||||||||||| || ||| ||||||||||||   |||||||||  | ||||||||||||||||||||||||    
T  32947014 gtcgaaccggatgagaaggttctgatcgaacccaaccgttgaagacccatcgacacctcctcacaccaccaaaa 32946941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 14351808 - 14351756
Alignment:
Q  43 agcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaa 95  Q
    |||| ||||||||||||| ||||| || ||| |||||||||||||||||||||    
T  14351808 agcacaaggaatgctagactaggaatcttaaagtagcaacatacaaaggaaaa 14351756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 19554600 - 19554788
Alignment:
Q  11 tgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatcca 110  Q
    |||||| |||||||| | || || | || |||| || ||| ||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||    
T  19554600 tgaatttattaaaatcataaagaatcctgaccaacacaagaaatgctagattaggagtcgtaaagtagcaacatacaaaggaaaataaaagttgta-cca 19554698  T
Q  111 aaaccctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||||||||||| ||| |||||         |||||||||||||||||||||||||||||||| |||||| ||||| |||| || | |||||||    
T  19554699 aaaccctcaccaaacgtacataaaaaa---cctcaaccaacatcacaagctgccacaaaaaaaaacttccaccacttacattccggtgctcgc 19554788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 19411793 - 19411660
Alignment:
Q  52 aatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccctcacccaacatacatnnnnnnnnccctcaaccaac 151  Q
    ||||||||| ||||| || ||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||          ||||||||||    
T  19411793 aatgctagactaggagtcgtaaagtagcaacatacaaaggaaaataaaagttgta-ccaaaaccctgaccaaacgtacataaaaaat---ctcaaccaac 19411698  T
Q  152 atcacaagctgccacaaaaaacaacttcaaccacctac 189  Q
     |||||||||||||| ||||| |||||| |||||||||    
T  19411697 gtcacaagctgccaccaaaaaaaacttccaccacctac 19411660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 20516252 - 20516370
Alignment:
Q  5 caaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttg 104  Q
    |||||| ||||| |||||||| ||| ||| | |||||||||| ||||||||||||| || || || ||  ||||||||||||||| ||||| ||||||||    
T  20516252 caaaatggaatttattaaaatcacattgaatcctaaccagcacaaggaatgctagactaagagtcgtagagtagcaacatacaaacgaaaacaaaagttg 20516351  T
Q  105 tatccaaaaccctcacccaa 124  Q
    || ||||||||||| |||||    
T  20516352 ta-ccaaaaccctcccccaa 20516370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 514
Target Start/End: Complemental strand, 38149660 - 38149525
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    ||||||||||||||| |||| || ||||||||||  |||||||||||||| ||||   |||   |||||||| ||| || ||| |||||||||||         
T  38149660 aatccaccttcacagcagcaccaccatcgatccacgtcgacaaaccaccaaataacagagtacccgaaccgggtgagaaggttctgatcgaacccgacaa 38149561  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    |||||||| ||||| | | |||||||||||||||||    
T  38149560 ttgaagaccaaccggcccttcctcacaccaccaaaa 38149525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 5324264 - 5324219
Alignment:
Q  77 agcaacatacaaaggaaaataaaagttgtatccaaaaccctcaccca 123  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  5324264 agcaacatacaaaggaaaataaaagttgta-ctaaaaccctcaccca 5324219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 420 - 514
Target Start/End: Original strand, 20518976 - 20519070
Alignment:
Q  420 aaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttgttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||| ||||   ||| |||||||||||||| |||||| ||||||||||||   |||||||||  |||  | | |||||||||||||||||    
T  20518976 aaaccaccagataaaagagtagtcgaaccggatgagaatgttctgatcgaacccaaccgttgaagacccaccagcccttcctcacaccaccaaaa 20519070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 433
Target Start/End: Complemental strand, 32919651 - 32919597
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataa 433  Q
    ||||||||||||||| |||| || ||||||||||  |||||||||||||| ||||    
T  32919651 aatccaccttcacagcagcaccaccatcgatccacgtcgacaaaccaccagataa 32919597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 38149950 - 38149897
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattagga 66  Q
    |||| |||||||| ||| ||| |||||||||||| ||||||||||||| |||||    
T  38149950 aatttattaaaatcacagtgaattctaaccagcacaaggaatgctagactagga 38149897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 27632721 - 27632533
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaa 112  Q
    |||| |||||||| ||||||| | ||| || ||| ||||||| ||| |||| || || ||| ||||||||||||||||||||| ||||||||||| ||||    
T  27632721 aatttattaaaatcacaatgaatcctatccggcataaggaatactaaattatgaatcgtaaagtagcaacatacaaaggaaaacaaaagttgtat-caaa 27632623  T
Q  113 accctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    | |||||||||| ||||||        |||||||||||  |||||||||||||| |||||  ||||| ||||||||||  |||||||||||    
T  27632622 atcctcacccaagatacataaaaaaaaccctcaaccaatgtcacaagctgccac-aaaaattacttccaccacctacatcctgctgctcgc 27632533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 33757758 - 33757879
Alignment:
Q  80 aacatacaaaggaaaataaaagttgtatccaaaaccctcacccaacatac---atnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaac 176  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||   |         ||||||||||||||||||||||| || |||||||||     
T  33757758 aacatacaaaggaaaataaaagttgtacccaaaaccctcacccaaaatacaaaaaaattaaaaccctcaaccaacatcacaagctgtcataaaaaacaat 33757857  T
Q  177 ttcaaccacctacaatctgctg 198  Q
    ||| ||||||||| ||| ||||    
T  33757858 ttccaccacctacgatccgctg 33757879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 36608400 - 36608206
Alignment:
Q  5 caaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttg 104  Q
    |||||||||||| |||||||| | ||||| | |||||||||| |||||||| |||| ||  | |  ||| ||||||||||| ||| |||||  |||||||    
T  36608400 caaaattgaatttattaaaatcagaatgaatcctaaccagcacaaggaatgttagactaaaagttataaagtagcaacatataaa-gaaaaacaaagttg 36608302  T
Q  105 tatccaaaaccctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    || |||||||||||| |||||||||||        |||||||||||| |||||||||| ||| |||||||||||  ||||| |||| || |||||||||    
T  36608301 ta-ccaaaaccctcatccaacatacat-aaataaaccctcaaccaacgtcacaagctgacac-aaaaacaactttcaccacttacactccgctgctcgc 36608206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 9435985 - 9436182
Alignment:
Q  6 aaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgt 105  Q
    ||||| ||||| |||||||| |||| || |  |||||| || |||||||| || ||||||| || ||| ||||||||||| |||| |||| |||||||||    
T  9435985 aaaatagaatttattaaaatcacaaagaatcttaaccaacataaggaatgttatattaggagtcgtaaagtagcaacatataaagaaaaacaaaagttgt 9436084  T
Q  106 atccaaaaccctcacccaacatacat--nnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    |  ||||||||||| | |||||||||          || |||||||||||||||||||||||  |||||||| |||| ||||||| | || |||||||||    
T  9436085 a-acaaaaccctcaactaacatacataaaaaaaaaaccttcaaccaacatcacaagctgccaacaaaaacaa-ttcacccacctatattccgctgctcgc 9436182  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 33758088 - 33758221
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    |||||||| |||||   |||||| ||||||||||  ||||||||||| || ||||   ||| ||||||| |||||| || ||| ||||||||||||   |    
T  33758088 aatccaccatcacaacggcaacaccatcgatccacatcgacaaaccatcagataac--agtagtcgaactggatgagaaggttctgatcgaacccaaccg 33758185  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  |||| |||||||||||||||||||||    
T  33758186 ttgaagacccaccggcacctcctcacaccaccaaaa 33758221  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 514
Target Start/End: Original strand, 9436337 - 9436472
Alignment:
Q  379 aatccaccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttg 478  Q
    |||||||||||| |  | ||||| ||||||||||  |||||||||||| | ||||   |||  ||||||| ||||| || ||| |||| |||| |||  |    
T  9436337 aatccaccttcaaaccatcaacaccatcgatccacatcgacaaaccactagataacagagtaatcgaaccagatgagaaggttttgattgaactcagccg 9436436  T
Q  479 ttgaagacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||||||  ||||||||||||||||||||| ||||    
T  9436437 ttgaagacccaccgacacctcctcacaccacaaaaa 9436472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 7269982 - 7270061
Alignment:
Q  13 aattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaagga 92  Q
    |||| ||||||||  |||||| |  ||||||||| ||||||||||||  ||||| || ||| ||||||||||||||||||    
T  7269982 aatttattaaaatcgcaatgaatcttaaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaagga 7270061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 383 - 514
Target Start/End: Complemental strand, 47573 - 47442
Alignment:
Q  383 caccttcacagtagcaacatcatcgatccatctcgacaaaccaccatataatgtagtggtcgaaccggatgaaaatgttatgatcgaacccagttgttga 482  Q
    ||||||||||| ||||||| ||||||||||  ||||||| |||||| ||||   ||| |||||||||||||| |  ||||||||||||||||   |||||    
T  47573 caccttcacagcagcaacaccatcgatccacatcgacaacccaccagataacagagtagtcgaaccggatgagatagttatgatcgaacccaaccgttga 47474  T
Q  483 agacaaaccgacacctcctcacaccaccaaaa 514  Q
    ||||  ||||||||| ||||||||||||||||    
T  47473 agacccaccgacaccgcctcacaccaccaaaa 47442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 47921 - 47743
Alignment:
Q  18 attaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttgtatccaaaaccct 117  Q
    |||||||| ||||||| | ||||| |||| ||||| |||||||  |||| ||  || |||||||||||    |||||| |||||||||| |||||||| |    
T  47921 attaaaatcacaatgaatcctaacaagcacaaggagtgctagacaaggagtcgaaaagtagcaacata----ggaaaacaaaagttgta-ccaaaacctt 47827  T
Q  118 cacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccacaaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||||||||||||||        |||||||||||||||||||||||||||| ||||||||||| |||||||||| || |||||||||    
T  47826 cacccaacatacataaaaaac-ccctcaaccaacatcacaagctgccaca-aaaacaacttccaccacctacattccgctgctcgc 47743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 79728 - 79531
Alignment:
Q  5 caaaattgaattgattaaaatgacaatgagttctaaccagcagaaggaatgctagattaggattcctaaggtagcaacatacaaaggaaaataaaagttg 104  Q
    |||||| ||||| |||||||| ||||||||| ||||||| || ||| ||| |||||  || | || | | ||||||||||||||||||||| |||| |||    
T  79728 caaaatggaatttattaaaatcacaatgagtcctaaccaacataagaaatactagaccagaagtcattaagtagcaacatacaaaggaaaacaaaatttg 79629  T
Q  105 tatccaaaaccctcacccaacatacatnnnnnnnnccctcaaccaacatcacaagctgccac-aaaaaacaacttcaaccacctacaatctgctgctcgc 203  Q
    ||  ||||| ||||||||||| |||||        || ||||||| |||||||||||||||| ||||||||||||| ||| |||| |||| |||||||||    
T  79628 tactcaaaatcctcacccaac-tacat-aaaaaaaccatcaaccagcatcacaagctgccacaaaaaaacaacttccaccgcctataatccgctgctcgc 79531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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