View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_40 (Length: 403)
Name: NF19929_low_40
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 51546496 - 51546871
Alignment:
| Q |
13 |
attctatgaaaatcagtatattgtatagtcacaccctaatcaatgtccatatagtacattatttaaaggagtgaattaatcaagtactaaaattctcaaa |
112 |
Q |
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| T |
51546496 |
attctatgaaaatcagtatattgtatagtcacaccctaatcaatgtccatagagtacattatttaaaggagtgaattaatcaagtactaaaattctcaaa |
51546595 |
T |
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| Q |
113 |
ctttgagatgtgaatacatttcaacaaaaatatttcttattatacaagttaattcatggctaatttatcttctaaactctttcttcttctcttaacaatc |
212 |
Q |
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| T |
51546596 |
ctgtgagatgtgaatacatttcaacaaaaatatttcttattatacaagttaattcatggctaatttatcttctaaactctttcttcttctcttaacaatc |
51546695 |
T |
|
| Q |
213 |
ttccattcacccacttcagctttcaacaacaccacttcttcctcaacaacattgcatgcaaaaatctcttcaataaaatccttctgcagaactactccat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51546696 |
ttccattcacccacttcagctttcaacaacaccacttcttcctcaacaacattgcatgcaaaaatctcttcaataaaatccttctgcagaaatactccat |
51546795 |
T |
|
| Q |
313 |
atcctgaagtatgcttcaattcatcaaaactctccatctcaatagacataaatccaaacatcatttacatccttct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51546796 |
atcctgaagtatgcttcaattcatcaaaactctccatctcaatagacataaatccaaacatcattaacatccttct |
51546871 |
T |
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