View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_low_42 (Length: 400)
Name: NF19929_low_42
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 33 - 384
Target Start/End: Original strand, 32591483 - 32591835
Alignment:
| Q |
33 |
tataatacaagttacgtatatctagttatttttt-cccttnnnnnnnnttatattttttggaagggtagttacgaataacggttttttctcaacaaaaaa |
131 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32591483 |
tataatacaagttacatatatttagttatttttttcccttaaaaaaaattatattttttggaagggtagttacgaataacggttttttctcaacaaaaaa |
32591582 |
T |
|
| Q |
132 |
caagaaaagcaaataacaactgacgctattttcctcccagtttcctttatcgcataacaaactctctctctatataaacataaaccttaagccataagaa |
231 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32591583 |
caagaaaagcaaataacaactgatgctattttcctcccagtttcctttatcgcataacaaactgtctctatatataaacataaaccttaagccataagaa |
32591682 |
T |
|
| Q |
232 |
agaacacactcactttcacaagtgttttgtttcaattttcttttcaagagtttttcgataatcaaatcaaaatcaaacaatgtacagggtagcaaaagca |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32591683 |
agaacacactcactttcacaagtgttttgtttcaattttcttttcaagagtttttcgataatcaaatcaaaatcaaaaaatgtacagggtagcaaaagca |
32591782 |
T |
|
| Q |
332 |
tccgagtacctggtgataaccggagctggaatcgaagacatcaaacttgcaaa |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32591783 |
tccgagtacctggtgataaccggagctggaatcgaagacatcaaacttgcaaa |
32591835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 149 - 384
Target Start/End: Complemental strand, 51825725 - 51825499
Alignment:
| Q |
149 |
aactgacgctattttcctcccagtttcctttatcgcataacaaactctctctctatataaacataaaccttaagccataagaaagaacacactcactttc |
248 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51825725 |
aactgatgctattttcctcccagtttc-------gcataacaaactttctctatatataaacataaaccttaagccataagaaagaacacactcactttc |
51825633 |
T |
|
| Q |
249 |
acaagtgttttgtttcaattttcttttcaagagtttttcgataatcaaatcaaaatcaaacaatgtacagggtagcaaaagcatccgagtacctggtgat |
348 |
Q |
| |
|
| ||||||||| |||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51825632 |
agaagtgttttatttcaattttctttactagg--ttttcaataatcaaatcaaaatccaacaatgtacagggtagcaaaagcatccgagtacctggtgtt |
51825535 |
T |
|
| Q |
349 |
aaccggagctggaatcgaagacatcaaacttgcaaa |
384 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51825534 |
aaccggagccggaatcgaagacatcaaacttgcaaa |
51825499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 149 - 384
Target Start/End: Complemental strand, 31528349 - 31528096
Alignment:
| Q |
149 |
aactgacgctattttcctcccagtttcctttatcgcataacaaactctctctct--------------atataaacataaaccttaa--------gccat |
226 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
31528349 |
aactgatgctattttcctcccagtttccttcatcgcataacaaactctctctctctctatatatatatatataaacataaaccctaacaccttaggccat |
31528250 |
T |
|
| Q |
227 |
aagaaagaacacactcactttcacaagtgttttgtttcaattttcttttcaagagtttttcgataatcaaatcaaaatcaaacaatgtacagggtagcaa |
326 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||||| ||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31528249 |
aagaaataacacactcacgttcagaagtgttttgtttcgattttcttttctag---tttacgataatcaaatcaaaatcaa-caatgtacagggtagcaa |
31528154 |
T |
|
| Q |
327 |
aagcatccgagtacctggtgataaccggagctggaatcgaagacatcaaacttgcaaa |
384 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31528153 |
aagcatccgagtatctggtgataaccggagccggaatcgaagacatcaaacttgcaaa |
31528096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 26757446 - 26757362
Alignment:
| Q |
293 |
tcaaatcaaaatcaaacaatgtacagggtagcaaaagcatccgagtacctggtgataaccggagctggaatcgaagacatcaaact |
378 |
Q |
| |
|
|||||||||| |||| |||||| | ||| ||||||||||| || ||||| |||||||||||||| | ||| ||||||||||||| |
|
|
| T |
26757446 |
tcaaatcaaattcaag-aatgtataaggtcgcaaaagcatcagaataccttgtgataaccggagcatggatcaaagacatcaaact |
26757362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 49192802 - 49192726
Alignment:
| Q |
295 |
aaatcaaaatcaaacaatgtacagggtagcaaaagcatccgagtacctggtgataaccggagctggaatcgaagacat |
372 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||||||| | ||||| |||||||||||| |||||| ||||||| |
|
|
| T |
49192802 |
aaatcaaaatcaa-cgatgtacaaggtagcaaaagcatcacaataccttgtgataaccggaatcggaatcaaagacat |
49192726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University