View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_45 (Length: 392)

Name: NF19929_low_45
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_45
NF19929_low_45
[»] chr7 (13 HSPs)
chr7 (1-392)||(4714282-4714673)
chr7 (10-388)||(4704135-4704500)
chr7 (141-303)||(4705551-4705707)
chr7 (141-303)||(4788427-4788590)
chr7 (144-303)||(4700707-4700859)
chr7 (211-303)||(4833760-4833852)
chr7 (92-155)||(4705723-4705786)
chr7 (93-168)||(4833848-4833922)
chr7 (322-378)||(6676764-6676820)
chr7 (10-80)||(4700971-4701039)
chr7 (10-96)||(4834012-4834095)
chr7 (327-392)||(43989710-43989774)
chr7 (62-102)||(4788706-4788746)
[»] chr8 (1 HSPs)
chr8 (315-385)||(12158005-12158075)
[»] chr2 (2 HSPs)
chr2 (315-377)||(6911122-6911184)
chr2 (322-378)||(39403444-39403500)
[»] chr4 (1 HSPs)
chr4 (324-377)||(22679197-22679250)


Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 4714673 - 4714282
Alignment:
Q  1 gatgctcgagtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaagtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714673 gatgctcgagtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaagtat 4714574  T
Q  101 ttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714573 ttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgg 4714474  T
Q  201 gaaataattataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714473 gaaataattataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcg 4714374  T
Q  301 ttacaatgtaagagtaatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgattca 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714373 ttacaatgtaagagtaatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgattca 4714282  T

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Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 4704500 - 4704135
Alignment:
Q  10 gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaagtatttggcccat 109  Q
    |||||||||| |||||||||||| ||| |||  | || |  || ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  4704500 gtgaagtctttggaatattttggtatcaaag--atattttaaacagtcacggagaaagcaccaaaacgtcttattttaaatagaaaagtatttggcccat 4704403  T
Q  110 ttttg--ttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataa 207  Q
    ||||   |||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||       
T  4704402 tttttgtttaatttgtaaccacatacagggcaggacaacgaagatattagcatgtttaatttttccaagaaaaattccaaatcacgtgttctggaaa--- 4704306  T
Q  208 ttataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgttacaat 307  Q
      ||||||||| |||||||||||||||||||||| ||        |   ||||||||||||||||||||||| |||||||| |||||||||| |||  ||    
T  4704305 --ataattattgctcataaattttatctttaatatac--------gaaaaattataagctttttcttttgtgtcccacttgatgcaataatcattatgat 4704216  T
Q  308 gtaagagtaatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatga 388  Q
    | || ||||||| | ||||||||||||||| ||| |||||  |||| ||||||||||||||||||||||| ||||||||||    
T  4704215 gcaacagtaatgtgctatatgtgagttaaagtttcatattacatgcaagaatagatgatgagaaaaatattagtgagatga 4704135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 141 - 303
Target Start/End: Complemental strand, 4705707 - 4705551
Alignment:
Q  141 gacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcataaattttatctttaat 240  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||     || |||||| |||||||| ||||||| ||||    
T  4705707 gacaactaagatattagcatgtttaatttttctaggaaaaattccaaattacgtgtttgggaaa-----atgattattgctcataaactttatctataat 4705613  T
Q  241 agacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta 303  Q
    | ||| | ||||||| |||||| |||||| ||||||||| |||| ||||||||||||| ||||    
T  4705612 aaaccaaaaattgctcaattat-agctttatcttttgtgtcccagttggtgcaataatggtta 4705551  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 141 - 303
Target Start/End: Complemental strand, 4788590 - 4788427
Alignment:
Q  141 gacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcat-aaat-------ttta 232  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||     ||||||||| ||||| ||||       ||||    
T  4788590 gacaactaagatattagcatgtttaatttttctaggaaaaa-tccaaatcacgtgtttgggaaa-----ataattattgctcatgaaatttatatattta 4788497  T
Q  233 tctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta 303  Q
    | | ||||||||||| |||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||    
T  4788496 tatataatagacctaaaattgctgaattat-agctttatcttttgtgtcccagttggtgcaataatcgtta 4788427  T

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Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 4700859 - 4700707
Alignment:
Q  144 aactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcataaattttatctttaataga 243  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||   |||||||||||     ||||||||| |||||||||||||||| |||||||    
T  4700859 aactaagatattaacatgttta-tttttctaagaaaaattccaaatccaatgtttgggaaa-----ataattattgctcataaattttatctataataga 4700766  T
Q  244 cctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta 303  Q
    |||| ||||||| ||||| ||| ||||| |||  || |||||||||||||||||| ||||    
T  4700765 cctaaaattgctaaattagaag-tttttttttcttgtcccacttggtgcaataattgtta 4700707  T

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Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 4833852 - 4833760
Alignment:
Q  211 taattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta 303  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||| ||||||||| |||||||||||||    
T  4833852 taattattgctcataaattttatctataatagacctaaaattgctgaattataagctttttcattcgtgccccacttggcgcaataatcgtta 4833760  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 4705786 - 4705723
Alignment:
Q  92 gaaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatatt 155  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||| |||| |||||||||||||||    
T  4705786 gaaaagtatttggaccaattttgttaatttgtgaccacatacaaggcaagacaactaagatatt 4705723  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 4833922 - 4833848
Alignment:
Q  93 aaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatt 168  Q
    |||||||||| | ||||||| ||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  4833922 aaaagtattttgaccatttt-gttaatttgtgaccacattcagggcaggacaacttagatattagcatgtttaatt 4833848  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 6676820 - 6676764
Alignment:
Q  322 ttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatg 378  Q
    |||| |||||| |||| ||||||||||||||| ||| ||||||||||||||||||||    
T  6676820 ttatttgtgagctaaagttttatattggatgcaagagtagatgatgagaaaaatatg 6676764  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 4701039 - 4700971
Alignment:
Q  10 gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtct 80  Q
    |||||||||| ||||||||||| ||||||||  | || || || |||||| ||||||||||||||||||||    
T  4701039 gtgaagtctttggaatattttgccatctaag--atatttaaaatagtcacagagaaagctccaaaacgtct 4700971  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 4834095 - 4834012
Alignment:
Q  10 gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaa 96  Q
    ||||||||||  |||||||||||||||||||  | || ||||| ||||| |||||||||||| ||||||||  ||||||| ||||||    
T  4834095 gtgaagtctttagaatattttggcatctaag--atatttataacagtcatggagaaagctcc-aaacgtcttattttaaaaagaaaa 4834012  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 43989710 - 43989774
Alignment:
Q  327 tgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgattca 392  Q
    |||||||||||||||||||||| |||| | | |||||| ||||||| || | ||||||||||||||    
T  43989710 tgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagatgattca 43989774  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 4788746 - 4788706
Alignment:
Q  62 agaaagctccaaaacgtctctttttaaatagaaaagtattt 102  Q
    |||||||||||||||||||  |||| |||||||||||||||    
T  4788746 agaaagctccaaaacgtcttcttttcaatagaaaagtattt 4788706  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 12158005 - 12158075
Alignment:
Q  315 taatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgaga 385  Q
    ||||| || ||||||||||| | ||| |||||||||||| ||| |||||| |||||||||||| |||||||    
T  12158005 taatgtgtcatatgtgagtttatattctatattggatgcaagattagatggtgagaaaaatataagtgaga 12158075  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 6911122 - 6911184
Alignment:
Q  315 taatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatat 377  Q
    ||||| || ||||||||||| | |||||||||||||||| ||| |||||| ||||||||||||    
T  6911122 taatgtgtcatatgtgagtttatattttatattggatgcaagattagatggtgagaaaaatat 6911184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 39403500 - 39403444
Alignment:
Q  322 ttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatg 378  Q
    |||| ||||||||||| ||| | ||||||||| ||| ||||||||||||||||||||    
T  39403500 ttatttgtgagttaaagtttcagattggatgcaagagtagatgatgagaaaaatatg 39403444  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 22679250 - 22679197
Alignment:
Q  324 atatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatat 377  Q
    ||||||||||| | ||||||||||| |||| ||| |||||| ||||||||||||    
T  22679250 atatgtgagtttatattttatattgcatgcaagattagatggtgagaaaaatat 22679197  T

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