View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_46 (Length: 389)
Name: NF19929_low_46
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 43486405 - 43486247
Alignment:
| Q |
16 |
caaaggataaaagaatgactttcgatattatcaaggtcaatcaattgtaacagagaattaaggaaggcaaaacttttgtacaattaaaaatggaacagac |
115 |
Q |
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| T |
43486405 |
caaaggataaaagaatgactttcgatattatcaaggtcaatcaattgtaacagagaattaaggaaggcaaaactttggtacaattaaaaatggaacagac |
43486306 |
T |
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| Q |
116 |
agttaagcctgacaaagacaatatagtgtcctaagggggcactcgttagcatttcccttg |
175 |
Q |
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| T |
43486305 |
tgttaagcctgacaaagacaatatagtgtcataa-aggacactcgttagcattttccttg |
43486247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 245 - 358
Target Start/End: Complemental strand, 43486179 - 43486066
Alignment:
| Q |
245 |
ccatcctttttcttcttcatctgcaaaggggatttcgcaaacctttcatcttcgttttcaccaatgttgcttgtaacaaacatatcatgcatagcttaaa |
344 |
Q |
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| T |
43486179 |
ccatcctttttcttcttcatctgcaaaggggatttcgcaaacctttcatcttcgttttcaccaatgttgcttgtaataaacatatcatgcatagcttaaa |
43486080 |
T |
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| Q |
345 |
tgtgtatcatactg |
358 |
Q |
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| T |
43486079 |
tgtgtatcatactg |
43486066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 47870769 - 47870718
Alignment:
| Q |
247 |
atcctttttcttcttcatctgca-aaggggatttcgcaaacctttcatcttc |
297 |
Q |
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| T |
47870769 |
atcctctttcttcttcatctgcagaaggggatatcgcaaacttttcatcttc |
47870718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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