View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_47 (Length: 386)
Name: NF19929_low_47
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 107 - 366
Target Start/End: Complemental strand, 48393540 - 48393272
Alignment:
| Q |
107 |
atcgacaatgctacttttctatctgataaggaggctgcaattcctgatcatgatctcgaagctgctgcagacatggatgaagatttggattgtatttcca |
206 |
Q |
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| T |
48393540 |
atcgacaatgctacttttctatctgataaggaggctgcaattcctgatcatgatctcgaagctgctgcagacatggatgaagatttggattgtatttcca |
48393441 |
T |
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| Q |
207 |
attcgctgagatacatacatgga-----tattgtacgcaaaatggaggaggaagcgagttcagatgtct----------cagaat--tttgctagttgtt |
289 |
Q |
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| T |
48393440 |
attcgcagagatacatacatggatattatattgtacgcaaaatggaggaggaagcgagttcagatgtttattatatatccacaatgctttgtta---gtt |
48393344 |
T |
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| Q |
290 |
gacattgaaaatgaaattattttattattcgtgacatcacccaatcgattatgcaaacatgcctgcttgtaatgttc |
366 |
Q |
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| T |
48393343 |
gacattgaaaatgaaa-----ttattattcgtgacatcacccaatcgattatgcaaacatgcctgcttgtaatgttc |
48393272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 48393575 - 48393539
Alignment:
| Q |
7 |
tcgaagaatataaaaatgaaattcataatgtgattat |
43 |
Q |
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| T |
48393575 |
tcgaaaaaaataaaaatgaaattcataatgtgattat |
48393539 |
T |
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