View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_48 (Length: 380)
Name: NF19929_low_48
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 138 - 364
Target Start/End: Complemental strand, 14621697 - 14621471
Alignment:
| Q |
138 |
tggatatctcagaaatcgctaagaaactcaaactctccgattccaaacttctcatccgtaaagccgccgaactccgtcgcctctgcgatgtccactttga |
237 |
Q |
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| T |
14621697 |
tggatatctcagagatcgctaagaaactcaaactctccgattccaaacttctcatccgtaaagccgccgaactccgtcgcctctgcgatgtccactttga |
14621598 |
T |
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| Q |
238 |
ttcctccatcatcggcgtcgtaagtcgctttttatttacttacaattctataaccgttttcagttatttttgtttataaccgtttcttacaatcnnnnnn |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14621597 |
ttcctccatcatcggcgtcgtaagtcgctttttatttacttacaattctataaccgttttcagttatttttgtttataaccgtttcttacaatctttttt |
14621498 |
T |
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| Q |
338 |
nnagggtgaagttgcaaaagctattat |
364 |
Q |
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||||||||||||||||||||||||| |
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| T |
14621497 |
ttagggtgaagttgcaaaagctattat |
14621471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 14621823 - 14621789
Alignment:
| Q |
14 |
atatttcccggcaaacacagcgcgcgagaatattc |
48 |
Q |
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| T |
14621823 |
atatttcccggcaaacacagcgcgcgagaatattc |
14621789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 14621752 - 14621716
Alignment:
| Q |
83 |
cactaacatgccaatctcatttcccttcttcacttcc |
119 |
Q |
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| T |
14621752 |
cactaacatgccaatctcattttccttcttcacttcc |
14621716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 83 - 364
Target Start/End: Original strand, 17708433 - 17708714
Alignment:
| Q |
83 |
cactaacatgccaatctcatttcccttcttcacttccnnnnnnnnnnnnnnnnnntggatatctcagaaatcgctaagaaactcaaactctccgattcca |
182 |
Q |
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| T |
17708433 |
cactaacatgccaatctcatttcccttcttcacttccaaaaaaacaaaacaaaaatggatatctcagagatcgctaagaaactcaaactctccgattcca |
17708532 |
T |
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| Q |
183 |
aacttctcatccgtaaagccgccgaactccgtcgcctctgcgatgtccactttgattcctccatcatcggcgtcgtaagtcgctttttatttacttacaa |
282 |
Q |
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| T |
17708533 |
aacttctcatccgtaaagccgctgaactccgtcgcctctgcgatgttcactttgattcctccatcatcggcgtcgtaagtcgctttttgtttacttacaa |
17708632 |
T |
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| Q |
283 |
ttctataaccgttttcagttatttttgtttataaccgtttcttacaatcnnnnnnnnagggtgaagttgcaaaagctattat |
364 |
Q |
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| T |
17708633 |
ttctataaccgttttcagttatttttgtttataaccgtttcttacaatcttttttttagggtgaagttgcaaaagctattat |
17708714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 17708361 - 17708401
Alignment:
| Q |
8 |
cgaagaatatttcccggcaaacacagcgcgcgagaatattc |
48 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
17708361 |
cgaaaaatatttcccggcaaacacagcgcgcgagaatattc |
17708401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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