View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_5 (Length: 753)
Name: NF19929_low_5
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 16 - 742
Target Start/End: Complemental strand, 25745699 - 25744981
Alignment:
| Q |
16 |
caatttattggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcgaatttcttgcattgttttaaagagcatact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25745699 |
caatttattggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcaaatttcttgcattgttttaaagagcatact |
25745600 |
T |
|
| Q |
116 |
gcggcagtcaaagctcttgattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatgtacaaa |
215 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745599 |
gcggcagtcaaagctctcgattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatgtacaaa |
25745500 |
T |
|
| Q |
216 |
gaggaactaacatttgcagcatagataccaaagctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtac |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25745499 |
gaggaaccaacatttgcagcatagataccaaagctcaggtttgtggattacaatggaatagacattacaaagagatattaagtggtcatggctttagtac |
25745400 |
T |
|
| Q |
316 |
aagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccctcatacttcgagagtccttcatctttctcag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
25745399 |
aagtccagaacacaaccaactgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccctcatacttctagagtcctccatctttctcag |
25745300 |
T |
|
| Q |
416 |
gtatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgtgaatttttaaagcatgtaataatgtgagtac |
515 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
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| T |
25745299 |
gtatgcttcaagtcatcattacttaaaccagtatagtggtaaatcgtgagacgattaatcgtccaatgtgaatttttatagcatgtaagaatgcgagtac |
25745200 |
T |
|
| Q |
516 |
agtcattcattatttcattggcaagagcatctaatttagctgcttcagattgttttcatataaacttcaactttgttaaaacatataaacatgaatgaaa |
615 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25745199 |
agtcatt--------cattggcaagagcatctaatttagctgcttcagattgttttcatataaacttcaactttgttaaaacatataaacatgaatcaaa |
25745108 |
T |
|
| Q |
616 |
ccacttaaactttatcaaggtgattatttcattcaagttacactaatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagccggagga |
715 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745107 |
ccacttaaactttatcaaggtgattatttcattcaagttacactaatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagccggagga |
25745008 |
T |
|
| Q |
716 |
gatgagactcttcgcttttgggatatt |
742 |
Q |
| |
|
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| T |
25745007 |
gatgagactcttcgcttttgggatatt |
25744981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 288 - 742
Target Start/End: Original strand, 4348615 - 4349074
Alignment:
| Q |
288 |
agatattaagtggtcat---ggttttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccc |
384 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
4348615 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcc |
4348714 |
T |
|
| Q |
385 |
tcatacttcgagagtccttcatctttctcaggtatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgt |
484 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4348715 |
ccatacttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgt |
4348814 |
T |
|
| Q |
485 |
gaatttttaaagcatgtaataatgtgagtacagtcattcattatttcattggcaagagcatctaatttagctgcttcagattgttttc--------atat |
576 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||| |||||||||| | || |
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| T |
4348815 |
gaatttttaaagcatgtaataatgtgagtacaatca--------ttcattggcaagagcatctaatatagttgcttgggattgttttcaacaagtgacat |
4348906 |
T |
|
| Q |
577 |
aaacttcaactttgttaaaacatataaacatgaatgaaaccacttaaactttatcaaggtgattatttcattcaagt--tacactaatgctcttatgtct |
674 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||| |
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| T |
4348907 |
caacttcaactatgttaaaacatataaacatgaatgaaaccacttaaactttaacaaggggattatttctttcaagttatacactaatgctcttatgtct |
4349006 |
T |
|
| Q |
675 |
tgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttttgggatatt |
742 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||| | || ||||||||||| |||||||||||||||||| |
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| T |
4349007 |
tgcagagttcagatggtttaactgtggtttcatctgggggagatgagacgcttcgcttttgggatatt |
4349074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 251 - 423
Target Start/End: Complemental strand, 18928709 - 18928523
Alignment:
| Q |
251 |
caggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggcaat |
350 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||||||| |||||||||| | |||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
18928709 |
caggtttgtggtttacaatggaatagacaccacaaagagatatcaagtggtcatagctttagtacaaatccaaaacataaccaactgtgtttgtggcaat |
18928610 |
T |
|
| Q |
351 |
at-----------ccatctatgactaaagttggaggcttggaccctcatact---tcgagagtccttcatctttctcaggtatgctt |
423 |
Q |
| |
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|| |||||||||| ||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
18928609 |
atgccaatatccatcatctatgaccaaacttggaggcttgaaccctcatacttcctccagagtcctccatctttctcaggtatgctt |
18928523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 36841081 - 36840973
Alignment:
| Q |
249 |
ctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggca |
348 |
Q |
| |
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||||||||||||| ||||| ||||||||| | |||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||| |
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| T |
36841081 |
ctcaggtttgtggtttacaatggaatagatgccataaagagatattaagtggtcatgactttagtacaaatccaaaacattaccaactgtgtttgtggca |
36840982 |
T |
|
| Q |
349 |
atatccatc |
357 |
Q |
| |
|
||||||||| |
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|
| T |
36840981 |
atatccatc |
36840973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 18929120 - 18929053
Alignment:
| Q |
16 |
caatttattggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgt |
83 |
Q |
| |
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|||||||||||| |||||||||||||||||||| | ||||| |||||| | ||||| |||||||||| |
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| T |
18929120 |
caatttattggcaagtggtggcaatgaaaatcacatctatgtgtgggacgcaaataagatgaactcgt |
18929053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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