View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_50 (Length: 365)
Name: NF19929_low_50
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 23 - 357
Target Start/End: Original strand, 278426 - 278756
Alignment:
| Q |
23 |
agaaaattcaggaaaaagatctaggagctcaaatgaggtaacaaacagaagccagaaggcccatgaatcttctaaatgtttcccttactactg---tttt |
119 |
Q |
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| T |
278426 |
agaaaattcaggaaaaagatctaggagctcaaatgaggtaacaaacagaag-------gcccatgaatcttctaaatgtctcccttactactgctgtttt |
278518 |
T |
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| Q |
120 |
ttatttcttctttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattatagg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
278519 |
ttatttcttctttccaactgatatgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgatattatagg |
278618 |
T |
|
| Q |
220 |
tcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaactt |
319 |
Q |
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| T |
278619 |
tcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagacctt |
278718 |
T |
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| Q |
320 |
aagcggttattgttcagaggatgagtccaattcttctc |
357 |
Q |
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| T |
278719 |
aagcggttattgttcagaggatgagtccaattcttctc |
278756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 206 - 354
Target Start/End: Complemental strand, 24653551 - 24653403
Alignment:
| Q |
206 |
tttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttct |
305 |
Q |
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| T |
24653551 |
tttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttct |
24653452 |
T |
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| Q |
306 |
caggatcagaacttaagcggttattgttcagaggatgagtccaattctt |
354 |
Q |
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| T |
24653451 |
caggatcagaccttaagcaattgttgttcagataatgaatccaattctt |
24653403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 24685277 - 24685159
Alignment:
| Q |
205 |
atttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttc |
304 |
Q |
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| T |
24685277 |
atttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttc |
24685178 |
T |
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| Q |
305 |
tcaggatcagaacttaagc |
323 |
Q |
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||| ||||||| ||||||| |
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| T |
24685177 |
tcaagatcagaccttaagc |
24685159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 315
Target Start/End: Complemental strand, 24682535 - 24682423
Alignment:
| Q |
206 |
tttgatattataggtcccaaagaacaagaggaat---gttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggt |
302 |
Q |
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| T |
24682535 |
tttgattttataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggt |
24682436 |
T |
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| Q |
303 |
tctcaggatcaga |
315 |
Q |
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||||||||||||| |
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| T |
24682435 |
tctcaggatcaga |
24682423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 322
Target Start/End: Complemental strand, 24631957 - 24631760
Alignment:
| Q |
123 |
tttcttct-ttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtc |
221 |
Q |
| |
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|||||||| |||||| ||||||| ||||| ||||||| ||| |||||||| || ||| |||||| ||| ||| ||| || ||||||| |||| ||| |
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| T |
24631957 |
tttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgt-tttcgattttgtgagattatcccggttatttgattttattagtc |
24631859 |
T |
|
| Q |
222 |
ccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaa |
321 |
Q |
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||||||||||||||||| ||||||||| ||||| || || | || |||||||| ||| |||| ||||||||| ||||||| | |||||||| ||||| |
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| T |
24631858 |
ccaaagaacaagaggaa--ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaa |
24631761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 314
Target Start/End: Complemental strand, 41806256 - 41806086
Alignment:
| Q |
142 |
atgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgt |
241 |
Q |
| |
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|||||||||||||||| || |||||||||||| ||| |||||| ||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||| |
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| T |
41806256 |
atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagag-aatgt |
41806159 |
T |
|
| Q |
242 |
taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
314 |
Q |
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||| ||||| |||| | || | ||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
41806158 |
taactgtagaaagaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 41800031 - 41799980
Alignment:
| Q |
264 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatcaga |
315 |
Q |
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| T |
41800031 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcaga |
41799980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 41800138 - 41800036
Alignment:
| Q |
138 |
tgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagga |
237 |
Q |
| |
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|||| ||||||||||||||| ||| |||||||||||| ||| |||||| | | ||| ||| || ||||||| ||||||||||| ||||||||| ||| |
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| T |
41800138 |
tgatgtgcatttccttttcctgcacagtttatggtttgtgttt-gattttgttagattctcctggttatttgattttataggtcccgaagaacaagggga |
41800040 |
T |
|
| Q |
238 |
atgt |
241 |
Q |
| |
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|||| |
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|
| T |
41800039 |
atgt |
41800036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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