View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_51 (Length: 365)

Name: NF19929_low_51
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_51
NF19929_low_51
[»] scaffold0256 (2 HSPs)
scaffold0256 (184-354)||(10946-11114)
scaffold0256 (23-185)||(11197-11379)
[»] chr7 (3 HSPs)
chr7 (187-328)||(48298561-48298702)
chr7 (81-185)||(48298788-48298893)
chr7 (39-84)||(48298910-48298955)
[»] chr2 (6 HSPs)
chr2 (187-328)||(233445-233586)
chr2 (81-185)||(21629176-21629281)
chr2 (194-301)||(21629371-21629478)
chr2 (24-78)||(21629099-21629153)
chr2 (81-185)||(233672-233777)
chr2 (39-84)||(233794-233839)
[»] chr1 (3 HSPs)
chr1 (187-328)||(7391909-7392050)
chr1 (39-84)||(7391656-7391701)
chr1 (81-185)||(7391718-7391823)
[»] chr6 (10 HSPs)
chr6 (81-185)||(16580419-16580523)
chr6 (81-185)||(16614857-16614961)
chr6 (81-185)||(16874279-16874383)
chr6 (190-278)||(16977314-16977403)
chr6 (24-82)||(16874202-16874260)
chr6 (24-84)||(16572356-16572416)
chr6 (24-84)||(16580342-16580402)
chr6 (24-84)||(16614978-16615038)
chr6 (81-144)||(16572433-16572495)
chr6 (147-185)||(16977492-16977530)


Alignment Details
Target: scaffold0256 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 184 - 354
Target Start/End: Complemental strand, 11114 - 10946
Alignment:
Q  184 ctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||  |||||||||||||||| ||||    
T  11114 ctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattc--tgagcgtggatcagctagaaa 11017  T
Q  284 attatttcgacatctctcctctttgtgttcatgttattgtcagtaagagtttaaagaatgacgagcttcat 354  Q
    ||||||||||| ||||||||||| ||||||||| |||||| | ||||||||||| |||||| |||||||||    
T  11016 attatttcgacctctctcctcttcgtgttcatgctattgtaattaagagtttaatgaatgatgagcttcat 10946  T

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Target: scaffold0256; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 11379 - 11197
Alignment:
Q  23 gatcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcat--------------------cagtaacaatttccttcg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||    
T  11379 gatcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcatgatgcgaagcataagatcatcagtaacaatttccttcg 11280  T
Q  103 cttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaatgttaaggatcatgtcatggttgtcacaaggcttct 185  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11279 cttgctcgagatcagtgacaaaaaaacattcaacggtcctcctgaaatgttaaggatcatgtcatggttgtcacaaggcttct 11197  T

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Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 187 - 328
Target Start/End: Complemental strand, 48298702 - 48298561
Alignment:
Q  187 gaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaaatt 286  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||  |||||    
T  48298702 gaaatgctgaaggacaaaatcaaggaggaggcgcttaggacatacctatttaccttctcttcatcatatgattctttgagcgtggatcagctcacaaatt 48298603  T
Q  287 atttcgacatctctcctctttgtgttcatgttattgtcagta 328  Q
     ||||||  |||||| || | ||| ||||  |||||||||||    
T  48298602 ttttcgatctctctcttcctcgtgctcatagtattgtcagta 48298561  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 48298893 - 48298788
Alignment:
Q  81 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 179  Q
    |||||||||| |||||||  ||||||||  || ||||||| |||  |||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||    
T  48298893 tcatcagtaagaatttccgccgcttgcttgaggtcagtgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaag 48298794  T
Q  180 gcttct 185  Q
    | ||||    
T  48298793 ggttct 48298788  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 48298955 - 48298910
Alignment:
Q  39 atctgctatgctactggaagttcccaatattgcagccaatgttcat 84  Q
    |||||||||||| |||||||||||||| || |||||||||||||||    
T  48298955 atctgctatgctgctggaagttcccaacatggcagccaatgttcat 48298910  T

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Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 187 - 328
Target Start/End: Complemental strand, 233586 - 233445
Alignment:
Q  187 gaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaaatt 286  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||  |||||    
T  233586 gaaatgctgaaggacaaaatcaaggaggaggcgcttaggacatacctatttactttctcttcatcatatgattctttgagtgtggatcagctcacaaatt 233487  T
Q  287 atttcgacatctctcctctttgtgttcatgttattgtcagta 328  Q
     ||||||  |||||| || | ||||||||  |||||||||||    
T  233486 ttttcgatctctctcttcctcgtgttcatagtattgtcagta 233445  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 21629176 - 21629281
Alignment:
Q  81 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctg-aaatgttaaggatcatgtcatggttgtcacaag 179  Q
    |||||||||| ||||||| |||||||||| |||| |||||||||| |||||||||||||||||||| |||||||| ||||||||| |||| |||||||||    
T  21629176 tcatcagtaagaatttccatcgcttgctcgagataagtgacaaaagaacattcaacggtcctcctgaaaatgttagggatcatgttatggctgtcacaag 21629275  T
Q  180 gcttct 185  Q
     |||||    
T  21629276 acttct 21629281  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 21629371 - 21629478
Alignment:
Q  194 tgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaaattatttcga 293  Q
    |||||||||||||||| |||| |||||||||||||||| || |||| | ||||||||||||||| ||||||||| |||||||||||| |||  |||||||    
T  21629371 tgaaggacaaaatcaaggaggaggcacttaggacatacctaattaccttctcttcatcatatgaatctttgagcatggatcagctcgcaaaaaatttcga 21629470  T
Q  294 catctctc 301  Q
    | ||||||    
T  21629471 cctctctc 21629478  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 21629099 - 21629153
Alignment:
Q  24 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaat 78  Q
    ||||||||||||  ||||||||||| || |||||||||||||||| |||||||||    
T  21629099 atcagtgtatctcatatctgctatggtattggaagttcccaatatggcagccaat 21629153  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 233777 - 233672
Alignment:
Q  81 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 179  Q
    |||||||||| |||||||  ||||||||  || ||||||| |||  |||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||    
T  233777 tcatcagtaagaatttccgccgcttgcttgaggtcagtgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaag 233678  T
Q  180 gcttct 185  Q
    | ||||    
T  233677 ggttct 233672  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 233839 - 233794
Alignment:
Q  39 atctgctatgctactggaagttcccaatattgcagccaatgttcat 84  Q
    |||||||||||| ||||||||||| || || |||||||||||||||    
T  233839 atctgctatgctgctggaagttccaaacatggcagccaatgttcat 233794  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 328
Target Start/End: Original strand, 7391909 - 7392050
Alignment:
Q  187 gaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagctcgaaaatt 286  Q
    |||||||| |||||||||||||| || | |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||  |||||    
T  7391909 gaaatgcttaaggacaaaatcaaggaagaggcacttaggacatacctatttaccttctcttcatcatatgattctttgagcgtggttcagctcacaaatt 7392008  T
Q  287 atttcgacatctctcctctttgtgttcatgttattgtcagta 328  Q
     ||||||  |||||| || | ||||||||  |||||||||||    
T  7392009 ttttcgatctctctcttcctcgtgttcatagtattgtcagta 7392050  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 7391656 - 7391701
Alignment:
Q  39 atctgctatgctactggaagttcccaatattgcagccaatgttcat 84  Q
    |||||||||||| |||||||||||||| || |||||||||||||||    
T  7391656 atctgctatgctgctggaagttcccaacatggcagccaatgttcat 7391701  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 7391718 - 7391823
Alignment:
Q  81 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 179  Q
    |||||||||| |||||||  ||||||||  || |||| || |||  |||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||    
T  7391718 tcatcagtaagaatttccgacgcttgcttgaggtcagcgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaag 7391817  T
Q  180 gcttct 185  Q
    | ||||    
T  7391818 ggttct 7391823  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 16580419 - 16580523
Alignment:
Q  81 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 179  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||     
T  16580419 tcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaa-aacattcaactgtcctcccgaaaatgttaaggatcatgtcatggttgtcacaat 16580517  T
Q  180 gcttct 185  Q
    ||||||    
T  16580518 gcttct 16580523  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 16614961 - 16614857
Alignment:
Q  81 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 179  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||     
T  16614961 tcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaa-aacattcaactgtcctcccgaaaatgttaaggatcatgtcatggttgtcacaat 16614863  T
Q  180 gcttct 185  Q
    ||||||    
T  16614862 gcttct 16614857  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 16874279 - 16874383
Alignment:
Q  81 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaag 179  Q
    |||||||||| ||||||   | ||||||| ||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||     
T  16874279 tcatcagtaagaatttcagccacttgctcgagatcagtgacaaaa-aacattcaacggtcctcccgaaaatgttatggatcatgtcatggttgtcacaat 16874377  T
Q  180 gcttct 185  Q
    ||||||    
T  16874378 gcttct 16874383  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 16977403 - 16977314
Alignment:
Q  190 atgctgaagg-acaaaatcaaagaggtggcacttaggacatacttatttacgtcctcttcatcatatgattctttgagcgtggatcagct 278  Q
    |||||||||| | |||||||| |||| | |||||||||||||| ||||||| ||| |||||||| ||||||||| ||| |||||||||||    
T  16977403 atgctgaagggaaaaaatcaaggaggagacacttaggacatacctatttacctccccttcatcacatgattcttagagagtggatcagct 16977314  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 16874202 - 16874260
Alignment:
Q  24 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttc 82  Q
    ||||||||||||| |||||| ||||||| ||||||||  ||||||||||||||||||||    
T  16874202 atcagtgtatctaatatctgttatgctattggaagttttcaatattgcagccaatgttc 16874260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 16572356 - 16572416
Alignment:
Q  24 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcat 84  Q
    ||||||||||||| |||||| ||||||| ||||||||  |||||||||||||||| |||||    
T  16572356 atcagtgtatctaatatctgatatgctattggaagttttcaatattgcagccaatattcat 16572416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 16580342 - 16580402
Alignment:
Q  24 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcat 84  Q
    ||||||||||||| |||||| ||||||| ||||||||  |||||||||||| |||||||||    
T  16580342 atcagtgtatctaatatctgttatgctattggaagttttcaatattgcagctaatgttcat 16580402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 16615038 - 16614978
Alignment:
Q  24 atcagtgtatctagtatctgctatgctactggaagttcccaatattgcagccaatgttcat 84  Q
    ||||||||||||| |||||| ||||||| ||||||||  |||||||||||| |||||||||    
T  16615038 atcagtgtatctaatatctgttatgctattggaagttttcaatattgcagctaatgttcat 16614978  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 16572433 - 16572495
Alignment:
Q  81 tcatcagtaacaatttccttcgcttgctcaagatcagtgacaaaataacattcaacggtcctcc 144  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||| ||||||||||||| ||||    
T  16572433 tcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaa-aacattcaacggttctcc 16572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 16977530 - 16977492
Alignment:
Q  147 aaatgttaaggatcatgtcatggttgtcacaaggcttct 185  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  16977530 aaatgttaaggatcatgtcatggttgtaacaaggcttct 16977492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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