View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_53 (Length: 356)
Name: NF19929_low_53
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 3919073 - 3919402
Alignment:
| Q |
11 |
cataggaactccaggaatcagtaaaatactatgccatggtcatcgtacagaaaacaagaacctatactatctttagttatcttttcagaattaaagctca |
110 |
Q |
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| T |
3919073 |
cataggaactccaggaatcagtaaaatactatgccatggtcatcgtacagaaaacaagaacctatactatctttagttatcttttcagaattaaagctca |
3919172 |
T |
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| Q |
111 |
acgtttttcttcccagatgtttcagaacctaaatacacaatacacatctccgaaattaacaaggaatatggttttataaccattactttctannnnnnnc |
210 |
Q |
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| T |
3919173 |
acgtttttcttcccagatgtttcagaacctaaatacacaatacacatctccgaaattaacaaggaatatggttttataaccattactttctatttttttc |
3919272 |
T |
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| Q |
211 |
catggtgatttcacttaagacgcttctaaggtttgctttattgatataggctgtttcagaaattttctctttgatcccacaatatagtgaaaagagtatg |
310 |
Q |
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| T |
3919273 |
catggtgatttcacttaagacgcttctaaggtttgctttattgatataggctgtttcagaaattttctctttgatcccacaatatagtgaaaagagtatg |
3919372 |
T |
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| Q |
311 |
ccaaattgatttagtgaaacacatgatatc |
340 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3919373 |
ccaaattgatttagtgaaacacatgatatc |
3919402 |
T |
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