View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_56 (Length: 333)
Name: NF19929_low_56
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_56 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 37067244 - 37066912
Alignment:
| Q |
1 |
taccaacatacaatatagcaacctaccaaaacataaatttagttaggctagtggccaaaaaagtgtctaaaacattaactgcaatagaagttacaatggc |
100 |
Q |
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| T |
37067244 |
taccaacatacaatataacaacctaccaaaacataaatttagttaggctagtggccaaaaaagtgtctaaaacattaactgcaatagaaattacaatggc |
37067145 |
T |
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| Q |
101 |
aagtttgtaatatgagtgttttaaatcataacagaaaatgttcccaaataaccaaattataaaaaatctaatgttgattggggcatcaaccttccaatgc |
200 |
Q |
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| T |
37067144 |
aagtttgtaatatgagtgttttaaatcataacaaaaaatgttcccaaataaccaaattataaaaaatctaatgttgattggggcatcaaccttccaatgc |
37067045 |
T |
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| Q |
201 |
ctctcccaaaattaaggctattagctacataaccaacatccctaatcttacaattagaataatcataaccaaaataatcaccactaattctaccactaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37067044 |
ctctcccaaaattaaggctattagctacataactaacatccctaatcttacaattagaataatcataaccaaaataatcaccactaattctaccactaaa |
37066945 |
T |
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| Q |
301 |
atcacttttctctaactcatcaaaatccaattc |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37066944 |
atcacttttctctaactcatcaaaatccaattc |
37066912 |
T |
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