View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_58 (Length: 331)
Name: NF19929_low_58
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 52954013 - 52953712
Alignment:
| Q |
9 |
acatcatcatccaaggtatttgtagcacgaaccaaatcaaacacattatcataaaaaggaaacctatgatccaagcttaagaaaagaggaaaaagtcctc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52954013 |
acatcatcatccaaggtatttgtagcacgaaccaaatcaaacacattatcataaaaaggaaacctatgatccaagcttaagaaaagaggaaaaagtcctc |
52953914 |
T |
|
| Q |
109 |
ttgcagctataaattcattgaaaggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953913 |
ttgcagctataaattcattgaaaggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaacc |
52953814 |
T |
|
| Q |
209 |
aattccaatatcaaatcctattctaattccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953813 |
aattccaatatcaaatcctattctaattccaccatttcctaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttga |
52953714 |
T |
|
| Q |
309 |
tt |
310 |
Q |
| |
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|| |
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|
| T |
52953713 |
tt |
52953712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 31674026 - 31673725
Alignment:
| Q |
9 |
acatcatcatccaaggtatttgtagcacgaaccaaatcaaacacattatcataaaaaggaaacctatgatccaagcttaagaaaagaggaaaaagtcctc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31674026 |
acatcatcatccaaggtatttgtagcacgaaccaaatcaaacacattatcataaaaaggaaacctatgatccaagcttaagaaaagaggaaaaagtcctc |
31673927 |
T |
|
| Q |
109 |
ttgcagctataaattcattgaaaggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaacc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31673926 |
ctgcagctataaattcattgaaaggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaacc |
31673827 |
T |
|
| Q |
209 |
aattccaatatcaaatcctattctaattccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttga |
308 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31673826 |
aattccaatatcaaatcctattctaattccaccatttcctaatgccaaaacatcagcaacaagaaaatcattcttacttctagacttaacaaacctttga |
31673727 |
T |
|
| Q |
309 |
tt |
310 |
Q |
| |
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|| |
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|
| T |
31673726 |
tt |
31673725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 23 - 310
Target Start/End: Original strand, 31903525 - 31903814
Alignment:
| Q |
23 |
ggtatttgtagcacgaaccaaatcaaacacattatcataaaaaggaaacctatgatccaagcttaagaaaagaggaaaaagtcctcttgcagctataaat |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903525 |
ggtatttgtagcacgaaccaaatcaaacacattatcataaaaaggaaacctatgatccaagcttaagaaaagaggaaaaagtcctcttgcagctataaat |
31903624 |
T |
|
| Q |
123 |
tcattgaaaggagcatcaatattaagagta--ctagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaatatc |
220 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903625 |
tcattgaaaggagcatcaatattaagagtatactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaatatc |
31903724 |
T |
|
| Q |
221 |
aaatcctattctaattccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgatt |
310 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903725 |
aaatcctattctaattccaccatttcctaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgatt |
31903814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 32 - 310
Target Start/End: Complemental strand, 28960278 - 28960000
Alignment:
| Q |
32 |
agcacgaaccaaatcaaacacattatcataaaaaggaaacctatgatccaagcttaagaaaagaggaaaaagtcctcttgcagctataaattcattgaaa |
131 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||| |||||||||||||| ||||| ||| |||| |||||||||||||||||||| || |||||| | || |
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| T |
28960278 |
agcatgaatcaaatcaaacacattgtcataaaatggaaacctatgatctaagctcaagtaaagtggaaaaagtcctcttgcagcaatgaattcactaaat |
28960179 |
T |
|
| Q |
132 |
ggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaatatcaaatcctattc |
231 |
Q |
| |
|
|| ||||||| |||||||||| | |||| | |||||||| || ||| ||||| |||||||||||| ||||||||| ||||||||||| || |||| |
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| T |
28960178 |
ggtgcatcaacattaagagtattggtaatcacagtaacatttctatcaaacattatagcagcaaaagaaccagaaccaccaccaatatcaaaccccattc |
28960079 |
T |
|
| Q |
232 |
taattccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgatt |
310 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| | ||||||||| |||||| | ||||| ||||| || ||||| |
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|
| T |
28960078 |
taattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgatt |
28960000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 310
Target Start/End: Complemental strand, 7760864 - 7760586
Alignment:
| Q |
32 |
agcacgaaccaaatcaaacacattatcataaaaaggaaacctatgatccaagcttaagaaaagaggaaaaagtcctcttgcagctataaattcattgaaa |
131 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||| |||||||||||||| ||||| ||| |||| |||||||||||||||||||| || |||||| | || |
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| T |
7760864 |
agcatgaatcaaatcaaacacattgtcataaaatggaaacctatgatctaagctcaagtaaagtggaaaaagtcctcttgcagcaatgaattcactaaat |
7760765 |
T |
|
| Q |
132 |
ggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaatatcaaatcctattc |
231 |
Q |
| |
|
|| ||||||| |||||||||| | |||| | |||||||| || ||| |||| |||||||||||| ||||||||| ||||||||||| || |||| |
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| T |
7760764 |
ggtgcatcaacattaagagtattggtaatcacagtaacatttctatcaaacattctagcagcaaaagaaccagaaccaccaccaatatcaaaccccattc |
7760665 |
T |
|
| Q |
232 |
taattccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgatt |
310 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| | ||||||||| |||||| | ||||| ||||| || ||||| |
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|
| T |
7760664 |
taattccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgatt |
7760586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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