View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_59 (Length: 330)

Name: NF19929_low_59
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_59
NF19929_low_59
[»] chr2 (1 HSPs)
chr2 (46-330)||(37768420-37768704)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 46 - 330
Target Start/End: Complemental strand, 37768704 - 37768420
Alignment:
Q  46 tactagcctaacaactaattatactaaaatttgcgtataatctcaatttatataaaacaaagatagcaaaacaatgttcatttaaaagactaaccaatat 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37768704 tactagcctaacaactaattatactaaaatttgcgtataatctcaatttatataaaacaaagatagcaaaacaatattcatttaaaagactaaccaatat 37768605  T
Q  146 gatttgaaacatcacagctttaatcaccttagaaagtgtttgttttggaggatgaccagcaacctgattttgtatcgatttcggagaattttggtccgga 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37768604 gatttgaaacatcacagctttaatcaccttagaaagtgtttgttttggaggatgaccagcaacctgattttgtatcgatttcggagaattttggtccaga 37768505  T
Q  246 gacatcgaattggttgctgaattttgtgttgcgtgtttacgacgactagtagagggagcagggacagtttcagattcaagcatgt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37768504 gacatcgaattggttgctgaattttgtgttgcgtgtttacgacgactagtagagggagcagggacagtttcagattcaagcatgt 37768420  T

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