View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_60 (Length: 324)
Name: NF19929_low_60
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 26540882 - 26541080
Alignment:
| Q |
14 |
agacaggaccacctttaccagcaggatcatggaccttctcttgcagcttatcaacttgaatgccaccttgatcttcctttgaaaacaaatcagttcttgt |
113 |
Q |
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| T |
26540882 |
agacaggaccaccttttccagcaggatcatggaccttctcttgcagcttatcaacttgaatgccaccttgatcttcctttgaaaacaaatcagttcttgt |
26540981 |
T |
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| Q |
114 |
acgattttctcctccttctattgattcatatattgttgctgtctttgactcttttggttgtgctccttgtgccccagacatgttctttcactcttttat |
212 |
Q |
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| T |
26540982 |
acgattttctcctccttctattgattcatatattgttgctgtctttgactcttttggttgtgctccttgtgccccagacatgttctttcactcttttat |
26541080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 26541159 - 26541210
Alignment:
| Q |
257 |
tatttagaggcaatgtgacctaccaaaaacaacccacgtacgtgttatgtta |
308 |
Q |
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| T |
26541159 |
tatttagaggcaatgtgacctaccaaaaacaacccacgtacgtgttatgtta |
26541210 |
T |
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