View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_61 (Length: 323)
Name: NF19929_low_61
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 106 - 313
Target Start/End: Complemental strand, 48857153 - 48856950
Alignment:
| Q |
106 |
gcaagaaacagaccaacatttatttatttatagacacgacgacatgaaatgttgctgagccaaaacctcaacttctggccacgtcatgatatcaccggag |
205 |
Q |
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| T |
48857153 |
gcaagaaacagaccaac----gtttatttatagacacgacgacatgaaatgttgctgcgccaaaacctcaacttctggccacgtcatgatatcaccggag |
48857058 |
T |
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| Q |
206 |
caactccacgacgaatcactctccatcagctccggcaattcaatctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaacgaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48857057 |
caactccacgacgaatcactctccatcagctccggcaattcaatctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaacgaag |
48856958 |
T |
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| Q |
306 |
ccttcatc |
313 |
Q |
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|||||||| |
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| T |
48856957 |
ccttcatc |
48856950 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 9776314 - 9776348
Alignment:
| Q |
233 |
agctccggcaattcaatctcaccccaaaaatcatc |
267 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
9776314 |
agctccggcaactcaatctcaccccaaaaatcatc |
9776348 |
T |
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