View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_63 (Length: 317)
Name: NF19929_low_63
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 33499307 - 33499602
Alignment:
| Q |
17 |
agacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttccaatattgtaaactgcatatggtttatttaaattaataaagttt |
116 |
Q |
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| T |
33499307 |
agacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttctaatattgtaaactgcatatggtttatttaaattaataaagttt |
33499406 |
T |
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| Q |
117 |
actttgaaaattagtacaaatggaatatccatttccatagtttgaagtaagtatgtcatgatgtatatcgtaaaatatgaagcttgtcgggatttaga-n |
215 |
Q |
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| T |
33499407 |
actttgaaaattagtacaaatggaatatccatttccttcgtttgaagtaagtatgtcatgatgtatatcgtaaaatatgaagcttgtcaggatttagatt |
33499506 |
T |
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| Q |
216 |
nnnnnnnnaggcaaaacaagcttattaaccttattattaggtgaacctcttctataaatagtttggttaaaccttata--tgtccttccctttgct |
309 |
Q |
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| T |
33499507 |
tttttattaggcaaaacaagcttattaaccttattattaggtgaacctcttctataaatagtttggttaaaccttatatgtgtccttccctttgct |
33499602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 33486232 - 33486393
Alignment:
| Q |
22 |
ttttatggtgtttaaactagtta-aattatttgctttttgtgtttgcttttccaatattgtaaactgcatatggtttatttaaattaataaagtttactt |
120 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||| | |||||||||||| ||||||||| |||| ||||| ||||||| |
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| T |
33486232 |
ttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttccggt---gtaaactgcataaggtttatttgaattcataaaatttactt |
33486328 |
T |
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| Q |
121 |
tgaaaattagtacaaatggaatatccatttccatagtttgaagtaagtatgtcatgatgtatatcgtaaaa |
191 |
Q |
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| T |
33486329 |
ttaaaatta--acaaacggaatatccatttttatcgtttg----aagtatgtcatgatttatatcgtaaaa |
33486393 |
T |
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