View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_66 (Length: 308)
Name: NF19929_low_66
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 28925999 - 28925866
Alignment:
| Q |
159 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28925999 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
28925900 |
T |
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| Q |
259 |
tcaatgattactgccacaaaaaccagctttttga |
292 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
28925899 |
tcaatgattactgccacaaacaccagctttttga |
28925866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 28916773 - 28916640
Alignment:
| Q |
159 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
258 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28916773 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatca |
28916674 |
T |
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| Q |
259 |
tcaatgattactgccacaaaaaccagctttttga |
292 |
Q |
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|| || | |||||||| ||||||||||||||||| |
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| T |
28916673 |
tccataagtactgccaaaaaaaccagctttttga |
28916640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 28892407 - 28892274
Alignment:
| Q |
159 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
258 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
28892407 |
gattttgttggatggggttcaagaagtctcgtagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcaatca |
28892308 |
T |
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| Q |
259 |
tcaatgattactgccacaaaaaccagctttttga |
292 |
Q |
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||| | | |||||||||||||||||||||||||| |
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| T |
28892307 |
tcagtaagtactgccacaaaaaccagctttttga |
28892274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 28926150 - 28926067
Alignment:
| Q |
8 |
agataatactggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatcagt |
91 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28926150 |
agatgatactggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgaaacgtcaagagttaaatcagt |
28926067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 28902361 - 28902228
Alignment:
| Q |
159 |
gattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcg |
258 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| || || ||| |||| ||||||| |||| |
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| T |
28902361 |
gattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacacgactgaagcgttgtctgaacttgatgttgcttggatca |
28902262 |
T |
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| Q |
259 |
tcaatgattactgccacaaaaaccagctttttga |
292 |
Q |
| |
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||| | |||||||||| ||||||||||||||| |
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| T |
28902261 |
tcatccagtactgccacacaaaccagctttttga |
28902228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 28935601 - 28935507
Alignment:
| Q |
162 |
tttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgat |
256 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||| | ||| ||| ||||||||||| |
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| T |
28935601 |
tttgttggatggggttcaagaagtctcatagattttcttaaagatattggtagagacacggcaaaagcatttacggaacatgatgttgcttcgat |
28935507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 28902510 - 28902435
Alignment:
| Q |
13 |
atactggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatc |
88 |
Q |
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|||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| | || |||||||||||||||||| |
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| T |
28902510 |
atactggtgaatctgatgcgagtgactttataggttctgattgtgatgacttggttggcacgtcaagagttaaatc |
28902435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 28935738 - 28935681
Alignment:
| Q |
16 |
ctggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgacac |
73 |
Q |
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||||||| ||||||||||| |||||||||| ||||||||||||||| | |||||||| |
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| T |
28935738 |
ctggtgactctgatgtgagttactttataggttctgattgtgacgacctagatgacac |
28935681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 28916889 - 28916835
Alignment:
| Q |
37 |
actttataggatctgattgtgacgacttcgatgacacgtcaagagttaaatcagt |
91 |
Q |
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|||||||||| ||||||| ||||||||| | || |||||||||||||||| |||| |
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| T |
28916889 |
actttataggttctgattctgacgacttggttggcacgtcaagagttaaaccagt |
28916835 |
T |
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