View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_69 (Length: 304)

Name: NF19929_low_69
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_69
NF19929_low_69
[»] chr4 (13 HSPs)
chr4 (1-291)||(55636434-55636724)
chr4 (46-286)||(55664287-55664524)
chr4 (1-221)||(54628191-54628409)
chr4 (12-136)||(52984694-52984818)
chr4 (139-258)||(55619748-55619866)
chr4 (139-258)||(55658098-55658216)
chr4 (132-240)||(52983850-52983957)
chr4 (139-258)||(55627052-55627170)
chr4 (1-67)||(51316142-51316208)
chr4 (23-126)||(55627168-55627275)
chr4 (1-58)||(54861354-54861411)
chr4 (23-117)||(55619873-55619971)
chr4 (23-117)||(55658223-55658321)
[»] chr8 (2 HSPs)
chr8 (80-271)||(9890808-9890997)
chr8 (1-42)||(9890759-9890800)
[»] chr2 (1 HSPs)
chr2 (159-291)||(13402949-13403078)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 55636434 - 55636724
Alignment:
Q  1 acagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636434 acagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttatt 55636533  T
Q  101 gcttatgttgttcttcatgtttgatgtttgcgtattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccatt 200  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636534 gcttatgttgttcttcatgtttgatgtttgggcattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccatt 55636633  T
Q  201 gtagtcttgttggtgatatattcagttcacaggttacaccaatcagagtattagttgggttgttcggtgaccgtaaacccttattttccat 291  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636634 gtagtcttgttgatgatatattcagttcacaggttacaccaatcagagtattagttgggttgttcggtgaccgtaaacccttattttccat 55636724  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 286
Target Start/End: Complemental strand, 55664524 - 55664287
Alignment:
Q  46 actcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttcatgtttgatgtttgcgtattacatgcata 145  Q
    |||||||||||||| |||||||  |||||| || ||||||||  |||||||||||||| ||| | ||||||| |||||||||||| |||| |||||||||    
T  55664524 actcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctttattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcata 55664425  T
Q  146 taaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggttacaccaatca 245  Q
    | |||  |||  |||| ||||||||||||||||||||||||  ||| | ||||||||||  |||||||||||||||| ||||| | ||||||||||||||    
T  55664424 ttaatcaaag-gtacacgttgtttaacatggagatgtggtg--atagttaccattgtagctttgttggtgatatatttagttctctggttacaccaatca 55664328  T
Q  246 gagtattagttgggttgttcggtgaccgtaaacccttattt 286  Q
     |||| |||||||  |||| ||||||   ||||||||||||    
T  55664327 aagtaatagttggactgttaggtgactagaaacccttattt 55664287  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 54628191 - 54628409
Alignment:
Q  1 acagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttatt 100  Q
    |||||||||| ||||||| || || ||||||||||||||||| | |||||||||||| | ||| |||   |||||||| | |||||||||||||||||      
T  54628191 acagagagcagatacaggtaagcttataaatcccatctttttgatactcaaatgatgctaaatttcatgcttaataaagtacaatgttaatttcttta-a 54628289  T
Q  101 gcttatgttgttcttcatgtt---tgatgtttgcgtattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataacc 197  Q
    ||| ||||| | ||||| |||   ||||||||| |||| |||| |||||||||||     |||||||| ||| | |||||||||||||||||||||||||    
T  54628290 gctcatgttttgcttcaagtttgatgatgtttgggtatcacatacatataaattg----ctacatgttatttgagatggagatgtggtgcaataataacc 54628385  T
Q  198 attgtagtcttgttggtgatatat 221  Q
    |||||| ||||| || ||||||||    
T  54628386 attgtactcttgctgatgatatat 54628409  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 52984818 - 52984694
Alignment:
Q  12 atacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattgcttatgttgt 111  Q
    ||||||| || |||| ||||||||||||||| | |||||||||||||| |||||||  ||||||||| ||||||||||||||||||||||||||||   |    
T  52984818 atacaggtaagctaacaaatcccatctttttgatactcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttctttattgcttatgcgtt 52984719  T
Q  112 tcttcatgtttgatgtttgcgtatt 136  Q
    |||||  |||||||||||| |||||    
T  52984718 tcttctagtttgatgtttgggtatt 52984694  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 55619866 - 55619748
Alignment:
Q  139 atgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggtt--a 236  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  || ||||||||||| ||||||||| ||||  ||||||  |    
T  55619866 atgcatataaattgaagct-acatgttgtttaacatggagatgtggtgcaatattaac--ttatagtcttgttgatgatatatttagttatcaggttaca 55619770  T
Q  237 caccaatcagagtattagttgg 258  Q
    |||||||||||||| |||||||    
T  55619769 caccaatcagagtaatagttgg 55619748  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 55658216 - 55658098
Alignment:
Q  139 atgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggtt--a 236  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  || ||||||||||| ||||||||| ||||  ||||||  |    
T  55658216 atgcatataaattgaagct-acatgttgtttaacatggagatgtggtgcaatattaac--ttatagtcttgttgatgatatatttagttatcaggttaca 55658120  T
Q  237 caccaatcagagtattagttgg 258  Q
    |||||||||||||| |||||||    
T  55658119 caccaatcagagtaatagttgg 55658098  T

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Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 52983957 - 52983850
Alignment:
Q  132 gtattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcaca 231  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||||||||| |||||| ||| || |||||| ||||| ||    
T  52983957 gtatcacatgcatataaattgaagct-acatgttgtttaaaatggagatgtggtgctatagtaaccattgcagtcttcttgatggtatatttagttctca 52983859  T
Q  232 ggttacacc 240  Q
    |||||||||    
T  52983858 ggttacacc 52983850  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 55627170 - 55627052
Alignment:
Q  139 atgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggtt--a 236  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||  || ||||||||||| ||||||||| ||||  ||||||  |    
T  55627170 atgcatataatttgaagct-acatgttttttaacatggagatgtggtgcaatattaac--ttatagtcttgttgatgatatatttagttatcaggttaca 55627074  T
Q  237 caccaatcagagtattagttgg 258  Q
    |||||||||||||| |||||||    
T  55627073 caccaatcagagtaatagttgg 55627052  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 51316142 - 51316208
Alignment:
Q  1 acagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatca 67  Q
    |||||||||| ||||||| || | ||||| |||||||||||||| |||||||||| ||| |||||||    
T  51316142 acagagagcagatacaggtaaacaaataattcccatcttttttatactcaaatgacgttaaatatca 51316208  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 55627275 - 55627168
Alignment:
Q  23 ctaataaatcccatcttttttaaactcaaatgatgttgaat----atcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttcat 118  Q
    |||||||||||||||||||||| |||||||| |||||  ||    ||||  | ||||||  |||||||||| ||||| ||||||||||| | |||||||     
T  55627275 ctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttatgcttttcttcaa 55627176  T
Q  119 gtttgatg 126  Q
    ||||||||    
T  55627175 gtttgatg 55627168  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 54861411 - 54861354
Alignment:
Q  1 acagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgt 58  Q
    |||||||||| ||||||| || ||||||||||||||  |||| | |||||||||||||    
T  54861411 acagagagcagatacaggtaagctaataaatcccattattttgatactcaaatgatgt 54861354  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 55619971 - 55619873
Alignment:
Q  23 ctaataaatcccatcttttttaaactcaaatgatgttgaat----atcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttca 117  Q
    |||||||||||||||||||||| |||||||| |||||  ||    ||||  | ||||||  |||||||||| ||||| ||||||||||| | |||||||    
T  55619971 ctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttatgcttttcttca 55619873  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 55658321 - 55658223
Alignment:
Q  23 ctaataaatcccatcttttttaaactcaaatgatgttgaat----atcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttca 117  Q
    |||||||||||||||||||||| |||||||| |||||  ||    ||||  | ||||||  |||||||||| ||||| ||||||||||| | |||||||    
T  55658321 ctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttatgcttttcttca 55658223  T

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Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 80 - 271
Target Start/End: Original strand, 9890808 - 9890997
Alignment:
Q  80 tgcaatgttaatttctttattgcttatgttgttcttcatgtttgatgtttgcgtattacatgcatataaattgaagcttacatgttgtttaacatggaga 179  Q
    |||||||||| ||||||||||||||||| | ||||||| ||||||||  || |||  |||||||||||||||||| || |||||||||||||||||||||    
T  9890808 tgcaatgttattttctttattgcttatgcttttcttcaagtttgatgcctgggtac-acatgcatataaattgaaact-acatgttgtttaacatggaga 9890905  T
Q  180 tgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggttacaccaatcagagtattagttgggttgttcggtgac 271  Q
    ||| ||||||||||||| ||||||||||||||| ||||||||| ||||| | |||||||||||||| |||| ||||||| ||||| ||||||    
T  9890906 tgttgtgcaataataactattgtagtcttgttgatgatatatttagttctctggttacaccaatcaaagtaatagttggattgttaggtgac 9890997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9890759 - 9890800
Alignment:
Q  1 acagagagcaaatacaggcaatctaataaatcccatcttttt 42  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  9890759 acagagagcagatacaggtaatctaataaatcccatcttttt 9890800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 291
Target Start/End: Original strand, 13402949 - 13403078
Alignment:
Q  159 acatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggt--tacaccaatcagagtattagtt 256  Q
    ||||| |||||||||||||||| ||||||||||| | |||||||||||||||    |||||||| ||||| |||||  ||||||||| |||||| | |||    
T  13402949 acatgctgtttaacatggagatctggtgcaataacagccattgtagtcttgt---agatatatttagttcccaggttatacaccaattagagtaattgtt 13403045  T
Q  257 gggttgttcggtgaccgtaaacccttattttccat 291  Q
    || ||||| ||||||  ||| ||||||||||||||    
T  13403046 ggtttgttaggtgac--taagcccttattttccat 13403078  T

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