View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_7 (Length: 718)
Name: NF19929_low_7
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 171 - 487
Target Start/End: Original strand, 6450966 - 6451262
Alignment:
| Q |
171 |
ttttagatatagggacacttctgtctataccaacaagacatatcttttttcggtagtacaaaacatgagagcttcatatttaaacatccttcatttagag |
270 |
Q |
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| T |
6450966 |
ttttagatatagggacacttctgtctataccaacaagacatatcttttttctgtagtacaaaacatcagagcttcatatttaaacatccttgatttaaag |
6451065 |
T |
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| Q |
271 |
catgtgagagatgagtgaccgtttgataaaacatgtagaaaaattccgtgtttaaaaattaaaattcaac----ataaatgcaatgtcaaaagtgatttt |
366 |
Q |
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| T |
6451066 |
catgtgagagatgagtgaccgtttgataaaatatgtagaaaaattccgtgtttaaaaattaaaatttaacatatataaatgcaatgtc-aaagtgatttt |
6451164 |
T |
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| Q |
367 |
atcaaattttaaacacaacattatttagtcttttacttcttttggttataattattaattagtacgttgttatacctaaatccaacatccaaaattttat |
466 |
Q |
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| T |
6451165 |
atcaaattttaagcacaacatta----------------ttttggtta-------taattagtacgttgttatacctaaatccagcatccaaaattttat |
6451241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 566 - 655
Target Start/End: Original strand, 6451263 - 6451351
Alignment:
| Q |
566 |
ttcacaattcttgacttctcaacactttatatgcatgtgtgaattaaaaagaaaaatatatagttatgtatgacattggttaatggttga |
655 |
Q |
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| T |
6451263 |
ttcacaattcttgacttctcaaaactttatatatatgtgtgaattaaaa-gaaaaatatatagttatgtatgacattggttaatggttga |
6451351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 6450841 - 6450907
Alignment:
| Q |
73 |
caattgtaattccgtattattcatagtgaatgaattgaggtaatttatagtattattattatgagtcatgtat |
145 |
Q |
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| T |
6450841 |
caattgtaattccgtattattgatagttaatgaattgaggt---ttatagtatt---attatgagtcatgtat |
6450907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6450775 - 6450814
Alignment:
| Q |
1 |
tcttcactcttaagtattgcatgtacaactcttaatagaa |
40 |
Q |
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| T |
6450775 |
tcttgactcttaagtattgcatgtacaactcttaatagaa |
6450814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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