View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_72 (Length: 301)
Name: NF19929_low_72
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 69 - 261
Target Start/End: Original strand, 26125312 - 26125517
Alignment:
| Q |
69 |
ttgaatgtgttaatttccctctaagaaatgtcattttcaggtgtgttattaaaaaataaataaatgttaaatttgaaatgaggcccaactatgctaagcc |
168 |
Q |
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| T |
26125312 |
ttgaatgtgttaatttccctctaagaaatgtcattttcaagtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcc |
26125411 |
T |
|
| Q |
169 |
cagcactcaaactctcctc-------------ttcaatgcaaggcaacagaaagggaaagctttctctgccatcactgttttcaccttggaaaatctctc |
255 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
26125412 |
cagcactcaaactctcctcattttcagaatcattcaatgcaaagcaacagaaagggaaagctttccctgccatcactgttttcacgttggaaaatctctc |
26125511 |
T |
|
| Q |
256 |
tttcac |
261 |
Q |
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|||||| |
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| T |
26125512 |
tttcac |
26125517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 25572079 - 25572199
Alignment:
| Q |
69 |
ttgaatgtgttaatttccctctaagaaatgtcattttcaggtgtgttattaaaaaataaataaatgttaaatttgaaatgaggcccaactatgctaagcc |
168 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
25572079 |
ttgaatgtgttaatttccctctaagaaatggcattttcaggtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcc |
25572178 |
T |
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| Q |
169 |
cagcactcaaactctcctctt |
189 |
Q |
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||||||||||||||||||||| |
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| T |
25572179 |
cagcactcaaactctcctctt |
25572199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 26006547 - 26006667
Alignment:
| Q |
69 |
ttgaatgtgttaatttccctctaagaaatgtcattttcaggtgtgttattaaaaaataaataaatgttaaatttgaaatgaggcccaactatgctaagcc |
168 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
26006547 |
ttgaatgtgttaatttccctctaagaaatggcattttcaggtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcc |
26006646 |
T |
|
| Q |
169 |
cagcactcaaactctcctctt |
189 |
Q |
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||||||||||||||||||||| |
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| T |
26006647 |
cagcactcaaactctcctctt |
26006667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 25572211 - 25572260
Alignment:
| Q |
228 |
tcactgttttcaccttggaaaatctctctttcaccttgatagtgaaaatt |
277 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25572211 |
tcactgttttcacgttggaaaatctctctttcaccttgatagtgaaaatt |
25572260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 26006679 - 26006728
Alignment:
| Q |
228 |
tcactgttttcaccttggaaaatctctctttcaccttgatagtgaaaatt |
277 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26006679 |
tcactgttttcacgttggaaaatctctctttcaccttgatagtgaaaatt |
26006728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 45047892 - 45048014
Alignment:
| Q |
66 |
aatttgaatgtgttaatttccctctaagaaatgtcatttt--caggtgtgttattaaaaaataaataaatgttaaatttgaaatgaggcccaactatgct |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
45047892 |
aatttgaatgtgttaatttccctctaagaaatgtcattttttcaggtgtgttattaagaaaaaaacaaatgttaaatttgaaatgaggcccaactatgct |
45047991 |
T |
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| Q |
164 |
aagcccagcactcaaactctcct |
186 |
Q |
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||||||||||||||||||||||| |
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| T |
45047992 |
aagcccagcactcaaactctcct |
45048014 |
T |
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