View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_75 (Length: 293)

Name: NF19929_low_75
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_75
NF19929_low_75
[»] chr4 (14 HSPs)
chr4 (9-274)||(2390965-2391230)
chr4 (9-274)||(2381337-2381602)
chr4 (9-274)||(2380082-2380338)
chr4 (125-239)||(2382562-2382676)
chr4 (51-108)||(2367678-2367735)
chr4 (237-269)||(2376407-2376439)
chr4 (80-180)||(2621192-2621292)
chr4 (62-105)||(1547469-1547512)
chr4 (65-108)||(2373256-2373299)
chr4 (41-116)||(2460589-2460664)
chr4 (62-109)||(12126879-12126926)
chr4 (241-274)||(2525592-2525625)
chr4 (60-105)||(6007668-6007713)
chr4 (233-269)||(2467387-2467423)
[»] chr1 (3 HSPs)
chr1 (41-165)||(15837955-15838079)
chr1 (44-91)||(9581951-9581998)
chr1 (44-90)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (61-105)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (60-105)||(32152209-32152254)
chr8 (41-106)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (50-105)||(10578802-10578857)
[»] chr5 (2 HSPs)
chr5 (59-105)||(32268773-32268819)
chr5 (60-105)||(41900267-41900312)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 2390965 - 2391230
Alignment:
Q  9 acatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccat 108  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2390965 acatcatcaaattccttgatgaagaccactatactttcaagtctctttctatcgtctcgaaacaattactctccatcaccaacaatctccgattctccat 2391064  T
Q  109 caaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391065 caaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttc 2391164  T
Q  209 tctcaacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcg 274  Q
    ||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2391165 tctcaatgcaatcgccccaacacgcttcttacccaaatctccactttccctttagtcctcagatcg 2391230  T

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Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 2381337 - 2381602
Alignment:
Q  9 acatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccat 108  Q
    ||||||||||||||||  ||||||| ||||  ||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||| |    
T  2381337 acatcatcaaattcctcaatggagaccactgcactttcaagtctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgattctccgt 2381436  T
Q  109 caaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttc 208  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||| |||||||| ||||||     
T  2381437 caaaatcaccctacaaaccatccctttcattcctcaactcttccaacgcttctctagtgtcacatccctcaatctcgcatccagcaacctcacttacttt 2381536  T
Q  209 tctcaacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcg 274  Q
    |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  2381537 tctctacacaatcaccccaacatgcttcttacccaaatctccgctttccctttagacctcaaatcg 2381602  T

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Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 2380082 - 2380338
Alignment:
Q  9 acatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccat 108  Q
    ||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||| |||||||| |||||| ||| | |||||||| || |    
T  2380082 acatcatcaaattccttgatggagaccactgtactgtcaagtctctttccatcgtctccaaacagttactctcgatcacctacagtttccgattcaccct 2380181  T
Q  109 caaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttc 208  Q
    ||||||||||||||||||||||||||| |||||||   |||| ||| |||    |||  |||||||||||||||||||||||| |||||         ||    
T  2380182 caaaatcacccaacaaaccatcccttttattcctcgcctcttgcaaaggtgtcgtaacatcacatccctcaatctcacatccatcaacc---------tc 2380272  T
Q  209 tctcaacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcg 274  Q
     ||||| ||||||||| ||||||||||||||| ||||||||| |||| |||||||| |||| ||||    
T  2380273 cctcaatacaatcacctcaacacgcttcttacacaaatctccgctttacctttagatctcaaatcg 2380338  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 2382562 - 2382676
Alignment:
Q  125 accatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcacc 224  Q
    |||||||||||||||||||   |||||| | || || |||||||||||||||||||| ||||||||  |||||||| | ||||||||||| ||||| |||    
T  2382562 accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacc 2382661  T
Q  225 ccaacacgcttctta 239  Q
     ||||||||||||||    
T  2382662 tcaacacgcttctta 2382676  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 2367678 - 2367735
Alignment:
Q  51 ctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccat 108  Q
    ||||||| ||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccat 2367735  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 2376407 - 2376439
Alignment:
Q  237 ttacccaaatctccactttccctttagacctca 269  Q
    |||||||||||||||||||||||||||||||||    
T  2376407 ttacccaaatctccactttccctttagacctca 2376439  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 2621192 - 2621292
Alignment:
Q  80 tccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctca 179  Q
    ||||||||||||  ||| || |||||||||| |||| || |  |||||||||||||||||||||   ||||| |  ||||| ||||| ||||||||||||    
T  2621192 tccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctca 2621291  T
Q  180 a 180  Q
    |    
T  2621292 a 2621292  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 1547469 - 1547512
Alignment:
Q  62 gtctccaaacaattactctccatcaccaacaatctccgattctc 105  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 2373256 - 2373299
Alignment:
Q  65 tccaaacaattactctccatcaccaacaatctccgattctccat 108  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||    
T  2373256 tccaaacaatttctctccatcaccaatcatctccgattctccat 2373299  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 2460664 - 2460589
Alignment:
Q  41 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatca 116  Q
    |||||||| ||||| || || ||||||||||| || ||||||||||||||   ||||||||||||  |||||||||    
T  2460664 actttcaaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctctcaaaatca 2460589  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 12126926 - 12126879
Alignment:
Q  62 gtctccaaacaattactctccatcaccaacaatctccgattctccatc 109  Q
    |||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  12126926 gtctccaaacaatttctctccatcaccaaccgtctcctattctccatc 12126879  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 2525625 - 2525592
Alignment:
Q  241 ccaaatctccactttccctttagacctcagatcg 274  Q
    ||||||||||||||||||||||||||||| ||||    
T  2525625 ccaaatctccactttccctttagacctcaaatcg 2525592  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 6007713 - 6007668
Alignment:
Q  60 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 105  Q
    ||||||| ||||| || |||||||||||||||| ||||||||||||    
T  6007713 tcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 2467423 - 2467387
Alignment:
Q  233 cttcttacccaaatctccactttccctttagacctca 269  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  2467423 cttcttaccaaaatctccactttccctttggacctca 2467387  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 15837955 - 15838079
Alignment:
Q  41 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattc 140  Q
    ||||||||||| || || || ||||||||||| || |||||||||||||||  ||||||||||||| |||||||||   | ||||| |||||||||||||    
T  15837955 actttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattc 15838054  T
Q  141 ctcaaatcttccaacggttctctaa 165  Q
    || |  |||||||| ||||| ||||    
T  15838055 ctaacctcttccaaaggttccctaa 15838079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 9581998 - 9581951
Alignment:
Q  44 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaac 91  Q
    ||||||||||||||| ||||||||||||| || ||||| |||||||||    
T  9581998 ttcaagtctctttctgtcgtctccaaacagtttctctctatcaccaac 9581951  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 9587556 - 9587510
Alignment:
Q  44 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaa 90  Q
    ||||||||||||||| ||||||||||||| || |||||| |||||||    
T  9587556 ttcaagtctctttctgtcgtctccaaacagtttctctccgtcaccaa 9587510  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 513446 - 513490
Alignment:
Q  61 cgtctccaaacaattactctccatcaccaacaatctccgattctc 105  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  513446 cgtctcaaaacagttactctccatcaccaacaatctccgattctc 513490  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 32152254 - 32152209
Alignment:
Q  60 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 105  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||    
T  32152254 tcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 39516924 - 39516859
Alignment:
Q  41 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctcc 106  Q
    |||||||||||||| || |||||||||| |||||| ||| |||||||||||  |||| ||||||||    
T  39516924 actttcaagtctctctccatcgtctccagacaatttctcgccatcaccaaccgtctcagattctcc 39516859  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 10578802 - 10578857
Alignment:
Q  50 tctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctc 105  Q
    ||||| ||| |||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  10578802 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 10578857  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 32268819 - 32268773
Alignment:
Q  59 atcgtctccaaacaattactctccatcaccaacaatctccgattctc 105  Q
    |||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  32268819 atcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 41900267 - 41900312
Alignment:
Q  60 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 105  Q
    ||||||||||||| || |||||||||||||||| ||| ||||||||    
T  41900267 tcgtctccaaacagtttctctccatcaccaacactcttcgattctc 41900312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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