View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_79 (Length: 283)

Name: NF19929_low_79
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_79
NF19929_low_79
[»] chr6 (3 HSPs)
chr6 (130-260)||(10507427-10507558)
chr6 (17-105)||(10507225-10507317)
chr6 (220-260)||(17151267-17151308)
[»] chr8 (3 HSPs)
chr8 (224-263)||(10405082-10405121)
chr8 (221-260)||(17704044-17704084)
chr8 (222-260)||(44084263-44084301)
[»] chr4 (3 HSPs)
chr4 (224-260)||(56204978-56205014)
chr4 (224-260)||(20566735-20566771)
chr4 (221-260)||(38374988-38375028)
[»] chr1 (2 HSPs)
chr1 (220-260)||(42045361-42045402)
chr1 (220-260)||(18043462-18043502)
[»] chr7 (2 HSPs)
chr7 (221-260)||(16577850-16577890)
chr7 (221-260)||(16587772-16587812)
[»] chr5 (1 HSPs)
chr5 (220-260)||(11720925-11720965)
[»] chr3 (1 HSPs)
chr3 (221-260)||(35863803-35863843)
[»] chr2 (1 HSPs)
chr2 (221-260)||(15447704-15447744)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 10507427 - 10507558
Alignment:
Q  130 ctattttaatttttctacaaaccgaagcatactgaagctctatacatttatcatgtcacatacgaggtggtctctggacaatcnnnnnnnggtggtggcc 229  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  10507427 ctattttaatttttctacgaaccgaagcatacttaagctctatacatttatcatgtcacatacgaggtggtctctggacaatctttttttggtggtggcc 10507526  T
Q  230 gaggtttgaa-tccagaccttgcatatattat 260  Q
    || |||||||  ||||||||||||||||||||    
T  10507527 gatgtttgaaccccagaccttgcatatattat 10507558  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 10507225 - 10507317
Alignment:
Q  17 agttaggaagctatttctttgtcaagtcacacagacccacac----tatgtaggaaggatatagaaaatactttattttttcttacagaatgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10507225 agttaggaagctatttctttgtcaagtcacacagacccacacatcctatgtaggaaggatatagaaaatactttattttttcttacagaatgc 10507317  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 17151308 - 17151267
Alignment:
Q  220 ggtggtggccgaggtttgaatcc-agaccttgcatatattat 260  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  17151308 ggtggtggccgaggtttgaaccccagaccttgcatatattat 17151267  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 10405121 - 10405082
Alignment:
Q  224 gtggccgaggtttgaatccagaccttgcatatattattca 263  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10405121 gtggccgaggtttgaatccagaccttgcatatatttttca 10405082  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 17704084 - 17704044
Alignment:
Q  221 gtggtggccgaggtttgaatc-cagaccttgcatatattat 260  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  17704084 gtggtggccgaggtttgaatcacagaccttgcatatattat 17704044  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 44084263 - 44084301
Alignment:
Q  222 tggtggccgaggtttgaatccagaccttgcatatattat 260  Q
    |||||||||||||||||| || |||||||||||||||||    
T  44084263 tggtggccgaggtttgaacccggaccttgcatatattat 44084301  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 56205014 - 56204978
Alignment:
Q  224 gtggccgaggtttgaatccagaccttgcatatattat 260  Q
    ||||||||||||||||||| |||||||||||||||||    
T  56205014 gtggccgaggtttgaatccggaccttgcatatattat 56204978  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 20566735 - 20566771
Alignment:
Q  224 gtggccgaggtttgaatccagaccttgcatatattat 260  Q
    |||||||||||||||| || |||||||||||||||||    
T  20566735 gtggccgaggtttgaacccggaccttgcatatattat 20566771  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 38375028 - 38374988
Alignment:
Q  221 gtggtggccgaggtttgaa-tccagaccttgcatatattat 260  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  38375028 gtggtggccggggtttgaactccagaccttgcatatattat 38374988  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 42045361 - 42045402
Alignment:
Q  220 ggtggtggccgaggtttgaa-tccagaccttgcatatattat 260  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  42045361 ggtggtggccggggtttgaactccagaccttgcatatattat 42045402  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 18043502 - 18043462
Alignment:
Q  220 ggtggtggccgaggtttgaatccagaccttgcatatattat 260  Q
    |||||||| || |||||||| ||||||||||||||||||||    
T  18043502 ggtggtggtcggggtttgaacccagaccttgcatatattat 18043462  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 16577850 - 16577890
Alignment:
Q  221 gtggtggccgaggtttgaatcc-agaccttgcatatattat 260  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  16577850 gtggtggccgaggtttgaaccccagaccttgcatatattat 16577890  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 16587812 - 16587772
Alignment:
Q  221 gtggtggccgaggtttgaatcc-agaccttgcatatattat 260  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  16587812 gtggtggccgaggtttgaaccccagaccttgcatatattat 16587772  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 11720965 - 11720925
Alignment:
Q  220 ggtggtggccgaggtttgaatccagaccttgcatatattat 260  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  11720965 ggtggtggccggggtttgaaccccgaccttgcatatattat 11720925  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 35863803 - 35863843
Alignment:
Q  221 gtggtggccgaggtttgaatcc-agaccttgcatatattat 260  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  35863803 gtggtggccgaggtttgaaccccagaccttgcatatattat 35863843  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 15447704 - 15447744
Alignment:
Q  221 gtggtggccgaggtttgaa-tccagaccttgcatatattat 260  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  15447704 gtggtggccggggtttgaactccagaccttgcatatattat 15447744  T

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