View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_low_84 (Length: 268)
Name: NF19929_low_84
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_84 |
 | |
|
| [»] scaffold1463 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 48105774 - 48105536
Alignment:
| Q |
16 |
aagtataaaatgaacattgatttctcttgtgattcttatttgtt---atgtaggcagagtattttgaagaggtactaagagaggcttattctcatccagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48105774 |
aagtataaaatgaacattgatttctcttgtgattcttatttgttgttatgtaggcagagtattttgaagaggtactaagagaggcttattctcatccagc |
48105675 |
T |
|
| Q |
113 |
agttgaagggattataatgtttgctggtccagcacaagctggtttcaacagtacacttcttgcagatacaaatttccaaactactccaactggacaagtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48105674 |
agttgaagggattataatgtttgctggtccagcacaagctggtttcaacagtacacttcttgcagatacaaatttccaaactactccaactggacaagtt |
48105575 |
T |
|
| Q |
213 |
gtggataatttgattcttgaatggggaagtgggccttat |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48105574 |
gtggacaatttgattcttgaatggggaagtgggccttat |
48105536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 48061940 - 48061765
Alignment:
| Q |
64 |
aggcagagtattttgaagaggtactaagagaggcttattctcatccagcagttgaagggattataatgtttgctggtccagcacaagctggtttcaacag |
163 |
Q |
| |
|
|||||||||| ||||||||| | || ||||| | ||| |||||||| || || |||||||| ||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
48061940 |
aggcagagtactttgaagagattcttagagaaggttactctcatcctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggtttcaacag |
48061841 |
T |
|
| Q |
164 |
tacacttcttgcagatacaaatttccaaactactccaactggacaagttgtggataatttgattcttgaatgggga |
239 |
Q |
| |
|
|||||| ||||||||| || |||| |||| ||||||||||||| | ||||||||||| ||||||||||| |||||| |
|
|
| T |
48061840 |
tacactccttgcagatgcagattttcaaaatactccaactggagacgttgtggataagttgattcttgagtgggga |
48061765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 48066111 - 48065965
Alignment:
| Q |
71 |
gtattttgaagaggtactaagagaggcttattctcatccagcagttgaagggattataatgtttgctggtccagcacaagctggtttcaacagtacactt |
170 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| || |||| |
|
|
| T |
48066111 |
gtattttgaagagatactaagagaggcttactctcatccagatgttgaagggattataatgtttgtaggtccagcacaagccggtttcaccaacacacaa |
48066012 |
T |
|
| Q |
171 |
cttgcagatacaaatttccaaactactccaactggacaagttgtgga |
217 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||| ||| | |||||||| |
|
|
| T |
48066011 |
cttgcagacgcaaattttcaaaatactccaaccggagacgttgtgga |
48065965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 48098944 - 48098768
Alignment:
| Q |
64 |
aggcagagtattttgaagaggtactaagagaggcttattctcatccagcagttgaagggattataatgtttgctggtccagcacaagctggtttcaacag |
163 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||| | ||||| ||||||| | |
|
|
| T |
48098944 |
aggcagagtatcttgaagacgtgctaagagaggcttactctcatccagctgttcaagggattataatttttgctggtccggaacaagttggtttcggcga |
48098845 |
T |
|
| Q |
164 |
tacacttcttgcagatacaaatttccaaactactccaactggacaagttgtggataatttgattcttgaatggggaa |
240 |
Q |
| |
|
|||| | || |||||| ||||||| | || ||||||||||||| | ||||||| || |||||| ||| ||||||| |
|
|
| T |
48098844 |
tacattactcgcagatgcaaattttcgaaatactccaactggagacattgtggacaagctgattcgtgagtggggaa |
48098768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 50230710 - 50230564
Alignment:
| Q |
71 |
gtattttgaagaggtactaagagaggcttattctcatccagcagttgaagggattataatgtttgctggtccagcacaagctggtttcaacagtacactt |
170 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||| | ||||| || |||| |
|
|
| T |
50230710 |
gtattttgaagagatactaagagaggcttactctcatccagctgttgaagggattataatgtttgtaggtccagcgcaagccgatttcatcaacacacaa |
50230611 |
T |
|
| Q |
171 |
cttgcagatacaaatttccaaactactccaactggacaagttgtgga |
217 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||| ||| | |||||||| |
|
|
| T |
50230610 |
cttgcagatgcaaattttaaaaatactccaaccggagacgttgtgga |
50230564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 1478 - 1566
Alignment:
| Q |
71 |
gtattttgaagaggtactaagagaggcttattctcatccagcagttgaagggattataatgtttgctggtccagcacaagctggtttca |
159 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||| ||||||| |||||||||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
1478 |
gtattttgaagagatactaagagaagcttactcttatccagctgttgaagggattataatgtttgtaggtccagcgcaagccggtttca |
1566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University