View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_low_85 (Length: 260)
Name: NF19929_low_85
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_85 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 26154532 - 26154335
Alignment:
| Q |
1 |
cgtgggtagattatactaattcggtggaaccatcctcatggccaccagttttgactcaaaatgagcaatacatgaattattagactttaatcaccatatt |
100 |
Q |
| |
|
||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26154532 |
cgtggatacattatattagttcggtggaaccatcctcatggccaccagttttgactcaaaatgagtaatacatgaattattagactttaatcaccatatt |
26154433 |
T |
|
| Q |
101 |
aaacacgttaaactttaaattaaaatttttataggaaaaatgagattgactaggtaacacttgagtttnnnnnnnttggaacattctatgttaatttt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26154432 |
aaacacgttaaactttaaattaaaatttttataggaaaaatgagattgactaggtaacacttgagtttaaaaaaattggaacattctatgttaatttt |
26154335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 26154294 - 26154254
Alignment:
| Q |
204 |
tatatatatatttatgttcaattatatgtcgacatacatat |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26154294 |
tatatatatatatatgttcaattatatgtcgacatacatat |
26154254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University