View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_88 (Length: 259)
Name: NF19929_low_88
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 45703956 - 45704187
Alignment:
| Q |
11 |
atactcttggttggttgagtatgaataaaaacatctgattataaaaattggagggccagaatctagtatcacaatgcaatgatacaatttattagttttg |
110 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45703956 |
atactcttggttggttgagtctgaataaaaacatctgattataaaaattggagggccagaatctagtatcacaatgcaatgatacaatttattagttttg |
45704055 |
T |
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| Q |
111 |
atgttgccgtagatgttgtatgtgcaaacatgctgctatcatgaatctgctaaacctcagcacatccgtttgttaatcaatagtgtttgtaaaaactcca |
210 |
Q |
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| T |
45704056 |
atgttgccgcagatgttgtatgtgcaaacatgctgctatcatgaatctgctaaacctcagcacatccgtttgttaatcaatagtgtttgtaaaaact--- |
45704152 |
T |
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| Q |
211 |
ccaccatgactgccaccgttgctgcgctataactg |
245 |
Q |
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| T |
45704153 |
ccaccatgattgccaccgttgctgcgctataactg |
45704187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 9439639 - 9439419
Alignment:
| Q |
11 |
atactcttggttggttgagtatgaataaaaacatctgattataaaaattggagggccagaatctagtatcacaatgcaatgatacaatttattagttttg |
110 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9439639 |
atactcttggttggttgagtctgaataaaaacatctgattataaaaactggagggccagaatctagtatcacaatgcaatgacacaatttattagttttg |
9439540 |
T |
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| Q |
111 |
atgttgccgtagatgttgtatgtgcaaac--atgctgctatcatgaatctgctaaacctcagcacatccgtttgttaatcaatagtgtttgtaaaaactc |
208 |
Q |
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|| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |
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| T |
9439539 |
at---------gatgttgtatgtgcaaacatatgctgctatcgtgaatctgctaaacctcagcacatccgtttgttaatcagtagtatttgcaaaaact- |
9439450 |
T |
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| Q |
209 |
caccaccatgactgccaccgttgctgcgctata |
241 |
Q |
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||||| ||| ||||||| ||||||||||||| |
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| T |
9439449 |
--ccaccgtgattgccaccattgctgcgctata |
9439419 |
T |
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