View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_90 (Length: 252)
Name: NF19929_low_90
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1516944 - 1517180
Alignment:
| Q |
1 |
ccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggcttat |
100 |
Q |
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| T |
1516944 |
ccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggcttat |
1517043 |
T |
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| Q |
101 |
aatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatataggct |
200 |
Q |
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| T |
1517044 |
aatattaatgatattttgctatattcccagttaaaaaaaataggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatataggct |
1517143 |
T |
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| Q |
201 |
agctacggctcatcttgtggacacaagtgaacttcat |
237 |
Q |
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| T |
1517144 |
agctacggctcatcttgtggacacaagtgaacttcat |
1517180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 2908282 - 2908515
Alignment:
| Q |
6 |
atggtcagatct--gtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggcttataat |
103 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||||||| |
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| T |
2908282 |
atggtcagatctttgtgtcgaagacttgctgcatcaccattccaaggcttggcatgttgaagtgatttgaggtatgcttcctaccactatggtttataat |
2908381 |
T |
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| Q |
104 |
attaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatataggctagc |
203 |
Q |
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| T |
2908382 |
attattggcatttcgctatattcccagttaaagcaaataggattacttggtatcctgagattgtgacctcttattcgatgaagtcggcatataggctagt |
2908481 |
T |
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| Q |
204 |
tacggctcatcttgtggacacaagtgaacttcat |
237 |
Q |
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| T |
2908482 |
tatcgctcattttgtggacacaagtgaacttcat |
2908515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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