View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_93 (Length: 249)
Name: NF19929_low_93
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 7116484 - 7116295
Alignment:
| Q |
54 |
attctatctttttgctacaacnnnnnnngaatgataaaatttcaaaaacttgattaaaatgtgaattattttgagtaatttctcttaaaaatcattttta |
153 |
Q |
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| T |
7116484 |
attctatctttttgctacaactttttttgaatgataaaatttcaaaaacttgattaaaatgtgaattattttgagtaatttctcttaaaaatcattttta |
7116385 |
T |
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| Q |
154 |
agatatatatttt--nnnnnnntgttattttactatataaaaatccccaataaggaatgtgtgtgtg----tattgtttaagatatatat |
237 |
Q |
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| T |
7116384 |
agatatatattttaaaaatatatgttattttactatataaaaatccccaataaggaatgtgtgtgtgtatatattgtttaagatatatat |
7116295 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 41568519 - 41568474
Alignment:
| Q |
121 |
attttgagtaatttctcttaaaaatcatttttaagatatatatttt |
166 |
Q |
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| T |
41568519 |
attttgaataacttctcataaaaatcatttttaagacatatatttt |
41568474 |
T |
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