View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_low_99 (Length: 242)
Name: NF19929_low_99
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_99 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 33158221 - 33158435
Alignment:
| Q |
17 |
agatactccacaaacacccatctattgtggttccactaaaaccctggttagtgtttatcatatcttaattactttatacatttatgacaataaatacatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33158221 |
agatactccacaaacacccatctattgtggttccactaaaaccctggttagtgtttatcatatcttaattactttatacatt-atgacaataaatacatt |
33158319 |
T |
|
| Q |
117 |
tgttattaaagtgagtacattttgtcttcactttttaatctagcttggtttgaatgtttaatatttaaacaggttaatattgatgtgttgaaaaagaagg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33158320 |
tgttattaaagtgagtacattttgtcttcactttttaatctagcttggtttgaatgttttatatttaaacaggttaatattgatgtgttgaaaaagaagg |
33158419 |
T |
|
| Q |
217 |
acgtgttcttgttcat |
232 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
33158420 |
acgttttcttgttcat |
33158435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 33181064 - 33181278
Alignment:
| Q |
17 |
agatactccacaaacacccatctattgtggttccactaaaaccctggttagtgtttatcatatcttaattactttatacatttatgacaataaatacatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33181064 |
agatactccacaaacacccatctattgtggttccactaaaaccctggttagtgtttatcatatcttaattactttatacatt-atgacaataaatacatt |
33181162 |
T |
|
| Q |
117 |
tgttattaaagtgagtacattttgtcttcactttttaatctagcttggtttgaatgtttaatatttaaacaggttaatattgatgtgttgaaaaagaagg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33181163 |
tgttattaaagtgagtacattttgtcttcactttttaatctagcttggtttgaatgttttatatttaaacaggttaatattgatgtgttgaaaaagaagg |
33181262 |
T |
|
| Q |
217 |
acgtgttcttgttcat |
232 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
33181263 |
acgttttcttgttcat |
33181278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 33140026 - 33140088
Alignment:
| Q |
170 |
atgtttaatatttaaacaggttaatattgatgtgttgaaaaagaaggacgtgttcttgttcat |
232 |
Q |
| |
|
|||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
33140026 |
atgttttataattaaacaggttaatatcgaagtgttgaaaaagaaggacgtgttcttgttcat |
33140088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 33288262 - 33288214
Alignment:
| Q |
184 |
aacaggttaatattgatgtgttgaaaaagaaggacgtgttcttgttcat |
232 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
33288262 |
aacaggttgatattgaagtgttgaaaaagaaagaagtgttcttgttcat |
33288214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University