View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1992_low_2 (Length: 609)
Name: NF1992_low_2
Description: NF1992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1992_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 50463985 - 50464227
Alignment:
| Q |
10 |
gtgagatgaagcaaaagaatatgacaaggaaatggggtctggtaggtgctttcatgtgtgaatttaatttgtaggttagtaaaattcaatgttattcaat |
109 |
Q |
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| T |
50463985 |
gtgatatgaagcaaaagaatatgacaaggaaatggggtctggtaggtgctttcatgtgtgaatttaatttgtaggttagtaaaattcaatgttattcaat |
50464084 |
T |
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| Q |
110 |
gcacgcatcaacaactgaatgtaacagcactcttttcagaagtgtcagtctcatatcttcctnnnnnnnntgttagatatttttaatttatttttataaa |
209 |
Q |
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| T |
50464085 |
gcacgcatcaacaactgaatgtaacagcactcttttcagaagtgtcagtctcatatcttcctaaaaaaaatgttagatatttttaatttatttttaaaaa |
50464184 |
T |
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| Q |
210 |
atatataattaccatcaaggtaagagatttaagaaatctcaaa |
252 |
Q |
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| T |
50464185 |
atatataattaccatcaaggtaagagatttaagtaatctcaaa |
50464227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 248 - 591
Target Start/End: Original strand, 50464299 - 50464640
Alignment:
| Q |
248 |
tcaaatatatttaacaacggagattgaacaacgataaatgatgttgaatatttcatatgtataacatgattgtnnnnnnnnntatcgagtatctttttta |
347 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||| || |
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| T |
50464299 |
tcaaatatatttaacgacgaagattgaataacgataaatggtgttaaatatttcatatgtataatatgattgtaaaaaaaa-tatcgagtatctttt-ta |
50464396 |
T |
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| Q |
348 |
taaaaagaaaaaggtatgccaatttggctccgaatctcagggtttatatagtgttgacgtagatacttacatattattcgttaacgatgaccttacatca |
447 |
Q |
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| T |
50464397 |
taaaaagaaaaaggtatgtcaatttggctccgaacctcagggttcatatagtgttgacgtagatacttacatattattcgttcacgacgaccttagatca |
50464496 |
T |
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| Q |
448 |
gcaaatagatctagatctaagtttttgtggtttgtgagttctcagctaaaaccttatcaattagatcannnnnnnaatattaaccatctgattcataaag |
547 |
Q |
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| T |
50464497 |
gtaaatagatctggatctaagtttttgtggtttgtgagttctcaactgaaaccttatcaattagatcacttttttagtattaaccctatgattcataaag |
50464596 |
T |
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| Q |
548 |
aaaagatatcttgataatctagagttcggttcaatggtaaataa |
591 |
Q |
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|||||| || ||| ||||||||||||||||| |||||||||||| |
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| T |
50464597 |
aaaagagattttggtaatctagagttcggttgaatggtaaataa |
50464640 |
T |
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