View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1992_low_3 (Length: 428)
Name: NF1992_low_3
Description: NF1992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1992_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 428
Target Start/End: Complemental strand, 1105400 - 1104984
Alignment:
| Q |
12 |
aattttttcttctttctagtagtgccatgttttgattcagaaatattgttagtgttacgtaaacatcaagtgttgcaagtggatgtttgaggaagacacc |
111 |
Q |
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| T |
1105400 |
aattttttcttctttctagtagtgccttgttttgattaataaatattgttagtgttatggaaacatcaagtgttgcaagtggatgtttgaggaagacacc |
1105301 |
T |
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| Q |
112 |
atttagatgtgtacacatgaatcaccttgctgatgttatgagtctcgtagataattcgaacaaatatttataatgacaaatcttgactttattagtcgat |
211 |
Q |
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| T |
1105300 |
ttttaggtgtgtacacatgaatcaccttgctgatgttatgagtctcgtagatcattcgaacaaatatttataatgacaaatcttaactttcctagtcgat |
1105201 |
T |
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| Q |
212 |
tttaaggggttgtgttagattaaattgcaaattttaaaatgatataagatcagtctattctgagatttgttggaccacttattcttaggtttttgctatc |
311 |
Q |
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||| ||||||||||||||| || ||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||| |
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| T |
1105200 |
ttttaggggttgtgttagaccaatttgcaaattctaaaatgatatcagatcagtctactctaagatttgttggaccacttattattaggtttctgctatc |
1105101 |
T |
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| Q |
312 |
aagtcatctaacatttatatctatgcattaaactcaatagtgctgaacatgaggacgtacacaatcctcatcttacaaatcgattttacatggttatatt |
411 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1105100 |
aagtcatctaacatttatatctacgcattaaactcaatagtgttgagcatgaggacgtacacaatcctcatcttacaaatcgattttacatggttatatt |
1105001 |
T |
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| Q |
412 |
aaacccaatcacatatt |
428 |
Q |
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| T |
1105000 |
aaacccaatcacatatt |
1104984 |
T |
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