View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1992_low_4 (Length: 394)
Name: NF1992_low_4
Description: NF1992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1992_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 51418656 - 51418280
Alignment:
| Q |
1 |
tcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccggcgactgcgttctgcaaccggagataatagcttcctcctactact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51418656 |
tcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccggcgactgcgttctgccaccggagataatagcttcctcctactact |
51418557 |
T |
|
| Q |
101 |
gtttacaccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggcacgtg |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51418556 |
gtttgcaccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataaaatacatatcagcatcacgtggacggcacgtg |
51418457 |
T |
|
| Q |
201 |
agtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatgttttttcctctcttcatcacttcttgcatatcctgcataactctatgactct |
300 |
Q |
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| T |
51418456 |
agtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatgttttttcctctcttcatcacttcttgcatatcctgcataactctatgactct |
51418357 |
T |
|
| Q |
301 |
tagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctcactttctcaattaccaccgttggttgt |
377 |
Q |
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| T |
51418356 |
tagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctcactttctcaattaccaccgttggttgt |
51418280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 73 - 376
Target Start/End: Complemental strand, 51413534 - 51413228
Alignment:
| Q |
73 |
ccggagataatagcttcctcctactactgtttacaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaa |
169 |
Q |
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||||||| || |||||||||||||||||| | | |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51413534 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaa |
51413435 |
T |
|
| Q |
170 |
atacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatgttttttcctctcttcatcact |
269 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |
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| T |
51413434 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttccctatgtttttccctctcttcatcact |
51413335 |
T |
|
| Q |
270 |
tcttgcatatcctgcataactctatgactcttagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctcactttctcaattaccaccg |
369 |
Q |
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||||||||||| || || ||||| | ||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||| ||||||| |
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| T |
51413334 |
tcttgcatatcttgtatcactctgttactcttagagacaccgttttgtaacatgaaacctagtaaacgcaccgttttgctcaatttctcaatcaccaccg |
51413235 |
T |
|
| Q |
370 |
ttggttg |
376 |
Q |
| |
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||||||| |
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| T |
51413234 |
ttggttg |
51413228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 51416581 - 51416472
Alignment:
| Q |
73 |
ccggagataatagcttcctcctactactgtttacacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatga |
168 |
Q |
| |
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|||||||||||||||| |||||||| ||| || ||||| |||| |||| |||||||| |||||||||||||||||||||| ||||||||||||| || |
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| T |
51416581 |
ccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacga |
51416482 |
T |
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| Q |
169 |
aatacatatc |
178 |
Q |
| |
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|||||||||| |
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| T |
51416481 |
aatacatatc |
51416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
147 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgctt |
217 |
Q |
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| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 29323695 - 29323651
Alignment:
| Q |
235 |
gtgctttccctatgttttttcctctcttcatcacttcttgcatat |
279 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
29323695 |
gtgctttccctatatttttacctctcttcatcacttcttgcatat |
29323651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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