View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1992_low_6 (Length: 349)
Name: NF1992_low_6
Description: NF1992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1992_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 42964649 - 42964959
Alignment:
| Q |
1 |
ttcttatgaaagggtatttatatccattgttcaagttttgtttacctaggcctgcaatcaaacattgtagttaaatttcagtcttattttaaccctagag |
100 |
Q |
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| T |
42964649 |
ttcttatgaaagggtatttatatccattgttcaagttttgtttacctaggcctgcaatcaaacattgtagttaaatttcagtcttattgta--------g |
42964740 |
T |
|
| Q |
101 |
ttagagaacaacaaaatttgtttacctaaacaaacaaaaattaaggaaatatatgtatgagttaagaagagaaacttgtttctgagtttcaaaatccact |
200 |
Q |
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| T |
42964741 |
tta-----------aatttgtttacctaaacaaacaaaaattaaggaaatatatgtatgagttaagaagagaaacttctttc-gagtttcaaaatccact |
42964828 |
T |
|
| Q |
201 |
aaaaaagttgtaaaatgatcattaacgtcgctgttattaataatgaattatctttaatttccatannnnnnnnattttaaaagagaaatagtttccttta |
300 |
Q |
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| T |
42964829 |
aaaaaagttgtaaaatgatcattaatgtcgctgttattaataatgaattatctttaatttccatttttttttattttaaaaagagaaatagtttcctttt |
42964928 |
T |
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| Q |
301 |
ttagttgacatacacatatcatcatatggaa |
331 |
Q |
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| T |
42964929 |
ttagttgacatacacatatcatcatatggaa |
42964959 |
T |
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