View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1992_low_8 (Length: 264)
Name: NF1992_low_8
Description: NF1992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1992_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 39984569 - 39984817
Alignment:
| Q |
4 |
gcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctg |
103 |
Q |
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| T |
39984569 |
gcagcacccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatcttgtcctcaaactcatcag |
39984668 |
T |
|
| Q |
104 |
cctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtc |
203 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || || |
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| T |
39984669 |
cctctgcaagctggttggcatctagccactggatagcagcctcaatggtgtcctcgatcttctttttgtcatccgaatcaagctttcctgcaattttttc |
39984768 |
T |
|
| Q |
204 |
atccttaattgtgttcctcatgttgtatgcataattttccaatgcattc |
252 |
Q |
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| T |
39984769 |
atccttaatggtgttcctcatgttgtatgcatagttttccaatgcattc |
39984817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 8018634 - 8018410
Alignment:
| Q |
28 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
127 |
Q |
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|||||||| ||||||||||||||||| |||||||| | || || | |||||||||||| || ||||||||||| |||||||| | ||||||| || | |
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| T |
8018634 |
ccaccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctctgccaactggttactgtcca |
8018535 |
T |
|
| Q |
128 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgtt |
227 |
Q |
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| T |
8018534 |
accactgaattgcagcgtcaattgcatcatcaatcttctttttgtcctcaggtgaaagctttgaaccaatcttctcgtctttaattgtgttcctcatgtt |
8018435 |
T |
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| Q |
228 |
gtatgcataattttccaatgcattc |
252 |
Q |
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||| || || |||||||| |||||| |
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| T |
8018434 |
gtaagcgtagttttccaaagcattc |
8018410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 8101614 - 8101759
Alignment:
| Q |
28 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
127 |
Q |
| |
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||||||||||||||||| |||||||| ||||| |||| | || | |||||||||||||| ||||||||||| || || ||||||||||| ||||| | |
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| T |
8101614 |
ccaccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttgcatcaa |
8101713 |
T |
|
| Q |
128 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtc |
173 |
Q |
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|||| || || || ||||||| | |||||||||| ||||||||| |
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| T |
8101714 |
gccattgaatggctccctcaattgcatcctcaatctgcttcttgtc |
8101759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 17706911 - 17706694
Alignment:
| Q |
11 |
ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc |
110 |
Q |
| |
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||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
17706911 |
ccatgccaagaccagcaccaccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgc |
17706812 |
T |
|
| Q |
111 |
aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta |
210 |
Q |
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|||||| || || ||||||||| |||||| |||||||||||||||||||| | |||||||| | |||||||||||||||||||||||| ||||||||| |
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| T |
17706811 |
aagctgattggcgtctagccaccggatagtagcctcaatggtgtcctcaa---ttttcttgtctttggaatcaagctttcctgcaatcttttcatcctta |
17706715 |
T |
|
| Q |
211 |
attgtgttcctcatgttgtat |
231 |
Q |
| |
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|| |||| |||| |||||||| |
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| T |
17706714 |
atggtgtccctcgtgttgtat |
17706694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 17649544 - 17649328
Alignment:
| Q |
11 |
ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc |
110 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||| ||||||||||||||||||| | | |
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| T |
17649544 |
ccatgtcaagacctgcaccaccttggtacatcttggcaatgatagggttgccgacacctcgcggttccttcatcttatcctcaaactcatctgcctattc |
17649445 |
T |
|
| Q |
111 |
aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta |
210 |
Q |
| |
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||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||||| ||||| ||| |
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| T |
17649444 |
aagctggtt-gggtctagccactggatagcagcctcaatggtgtcctcaa---tcttcttgtctttggaatcaagctttcatgcaatcttttcatcatta |
17649349 |
T |
|
| Q |
211 |
attgtgttcctcatgttgtat |
231 |
Q |
| |
|
|| |||||||||||||||||| |
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| T |
17649348 |
atggtgttcctcatgttgtat |
17649328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 23597805 - 23597721
Alignment:
| Q |
29 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaag |
113 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| | || |||| |||||||||||||||||||| ||||| |||||| |||| |
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| T |
23597805 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaag |
23597721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 236
Target Start/End: Complemental strand, 23588953 - 23588746
Alignment:
| Q |
29 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag |
128 |
Q |
| |
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||||||| |||||| | ||||||||||||||||| | | |||| |||||||||||||||||||| ||||| |||||| |||| || || |||| | |
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| T |
23588953 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23588854 |
T |
|
| Q |
129 |
ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg |
228 |
Q |
| |
|
||| || ||||| ||||||| | || ||||| |||||||| ||||| | | | ||| ||||||||||| || || |||||||||||||||||| |
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| T |
23588853 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23588754 |
T |
|
| Q |
229 |
tatgcata |
236 |
Q |
| |
|
|| ||||| |
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|
| T |
23588753 |
taggcata |
23588746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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