View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1992_low_9 (Length: 248)
Name: NF1992_low_9
Description: NF1992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1992_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 38569249 - 38569015
Alignment:
| Q |
14 |
acataacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgc |
113 |
Q |
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| T |
38569249 |
acataacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgc |
38569150 |
T |
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| Q |
114 |
tattggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgac |
213 |
Q |
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| T |
38569149 |
tattggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgac |
38569050 |
T |
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| Q |
214 |
caagtgaccaaggtaacataaaaccatgctacgaa |
248 |
Q |
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| T |
38569049 |
caagtgaccaaggtaacataaaaccatgctacgaa |
38569015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 38527832 - 38527615
Alignment:
| Q |
18 |
aacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgctatt |
117 |
Q |
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| T |
38527832 |
aacaaaagaaaaacaagagacagttccatttcacaaactattcacttttgcagattctactgacattttattaatgattgttggtactatcggtgctatt |
38527733 |
T |
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| Q |
118 |
ggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaag |
217 |
Q |
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| T |
38527732 |
ggaaacggtttgggtttacctcttatgacattattgttcggtcaaatgattgatagttttggtagtaaccaaagtaacaccaccgatgttgtagaacaag |
38527633 |
T |
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| Q |
218 |
tgaccaaggtaacataaa |
235 |
Q |
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| T |
38527632 |
tgtccaaggtatcataaa |
38527615 |
T |
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