View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_high_15 (Length: 414)
Name: NF19930_high_15
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28726069 - 28725844
Alignment:
| Q |
1 |
aacactaagaatacacaccagaataattaaagatagaaacaccaaaaataacaaatggacactaaaatagatcaaattttaacttgaaacaaagtatcta |
100 |
Q |
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| T |
28726069 |
aacactaagaatacacaccagaataattaaagatagaaacaccaaaaataacaaatggacactaaaatagatcaaattttaacttgaaacaaagtatcta |
28725970 |
T |
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| Q |
101 |
ttttcatgagcttatgacttctgataattgnnnnnnnttaaatcttattggggcctctttgagaaggaatagcgatgatattggttaaattaccatgctc |
200 |
Q |
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| T |
28725969 |
ttttcatgagcttatgacttttgataattgaaaaaaattaaatcttattggggactctttgagaaggaatagcgatgatattggttaaattaccatgctc |
28725870 |
T |
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| Q |
201 |
agttggtcttttactggcagtactag |
226 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
28725869 |
agttggtcttttactgacagtactag |
28725844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 28725818 - 28725733
Alignment:
| Q |
311 |
gatttgagtttttctcatataaaacaagttcaatgaagatagggaaaatacattaaagatattaaccattagttttcagcactaac |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28725818 |
gatttgagtttttctcatataaaacaagttcaatgaagataggaaaaatacattaaagatattaaccattagttttcagcactaac |
28725733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 28736959 - 28736881
Alignment:
| Q |
148 |
ttggggcctctttgagaaggaatagcgatgatattggttaaattaccatgctcagttggtcttttactggcagtactag |
226 |
Q |
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| T |
28736959 |
ttggggcctctttgagaaggaacaataacactattggttaaattaccttgctcagttggtcttttactgacggtactag |
28736881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 28725846 - 28725813
Alignment:
| Q |
238 |
tagcttataactttactgctcttgttttgatttg |
271 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
28725846 |
tagcttataactttactgctcttgttttgatttg |
28725813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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