View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19930_high_17 (Length: 396)
Name: NF19930_high_17
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 39289075 - 39288683
Alignment:
| Q |
1 |
gcaaaccaagaatagtcctttgtaaactgtgaaaccttgatccagcagaataatagacaaccttgtcttcctttttggtggttctgtttttggtagtacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39289075 |
gcaaaccaagaatagtcctttgtaaactgtgaaaccttgatctagcagaataatagacaaccttgacttcctttttggtggttctgtttttggtagtacc |
39288976 |
T |
|
| Q |
101 |
ttaactttttcttggttattttctatgtcttgaacttcagctagaaattcatactcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39288975 |
ttaactttttcttggttattttctatgtcttgaacttcagctagaaattcatactcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttg |
39288876 |
T |
|
| Q |
201 |
ctcgactccgagttggactaataccttgactctgaggaagaattttgaaagaattgtttcttgtccgaggaatccaaagccatgttccagttctctctgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39288875 |
ctcgactccgagttggactaataccttgactctgaggaagaattttgaaagaattgtttcttgtccgaggaatccaaagccatgttccagttctctctgg |
39288776 |
T |
|
| Q |
301 |
ctttgttggtgattcaattgcaaaagggcttcttctgttaggattgatctcgaatgcaacaccgcggcaacttgaaaaccttgctatcttcat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39288775 |
ctttgttggtgattcaattgcaaaagggcttcttctgttaggattgatctcgaatgcaacaccgcggcaacttgaaaaccttgctatcttcat |
39288683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 39295958 - 39295752
Alignment:
| Q |
1 |
gcaaaccaagaatagtcctttgtaaactgtgaaaccttgatccagcagaataatagacaaccttgtcttcctttttggtggttctgtttttggtagtacc |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |||||||| | || || ||||| || | |||||||||||| |
|
|
| T |
39295958 |
gcaaaccaagaacagtcctttgtacactgtgcaaccttgatccagcagaataatcgacaacctcgaattttttgttggtatgtcagactttggtagtacc |
39295859 |
T |
|
| Q |
101 |
ttaactttttcttggttattttctatgtcttgaacttcagctagaaattcatactcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttg |
200 |
Q |
| |
|
| |||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||| | |
|
|
| T |
39295858 |
tcaactttctcttggttattttccatgtcctgaacttgagctagaaattcatactcatcatcgtcagcatcaatgttgatgtcacagaagtgactactag |
39295759 |
T |
|
| Q |
201 |
ctcgact |
207 |
Q |
| |
|
||||||| |
|
|
| T |
39295758 |
ctcgact |
39295752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 39295724 - 39295592
Alignment:
| Q |
250 |
agaattgtttcttgtcc---gaggaatccaaagccatgttccagttctctctggctttgttggtgattcaattgcaaaagggcttcttctgttaggattg |
346 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| | | |||||| |||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
39295724 |
agaattgtttcttgtccatggaggaatccaaagccatgttcctgctttctctgtctttgttgttgattcaattgcaaaagggctgcttttgttaggattg |
39295625 |
T |
|
| Q |
347 |
atctcgaatgcaacaccgcggcaacttgaaaac |
379 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| |
|
|
| T |
39295624 |
atctcgaaggaaacaccgcggcaacttgaaaac |
39295592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University