View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_high_2 (Length: 643)
Name: NF19930_high_2
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_high_2 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 6018 - 5394
Alignment:
| Q |
1 |
aaagagttcatcacttctcctaaaaaattgatgaacatcaacaactcggtgggagaaggaaatcacgcagctgcacctctcactctgtcagccccaccac |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6018 |
aaagagtttatcacttctcctaaaaaattgatgaacatcaacaactcggtgggagaaggaaatcacgcagctgcacttctcactctgtcagccccaccac |
5919 |
T |
|
| Q |
101 |
cacattatccacatccactggtttaagacgcggttccacctctggctccttacctaccgccagaacctccaccgtcttcaccgaataagtgcattattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5918 |
cacattatccacatccactggtttaagacgcggttccacctctggctccttacctaccgccagaacctccaccgtcttcaccgaataagtgcattattca |
5819 |
T |
|
| Q |
201 |
gctctcacattcatttccgttgtcgacactcttgctgaaaccactagatgtcgattcatatattccccttcaaccgtcgccgccaccaaaacatctaaat |
300 |
Q |
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|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5818 |
gctctcacattcatttctgttgtcgacactcttgccgaaaccactagatgtcgattcatatattccccttcaaccgtcgccgccaccaaaacatctaaat |
5719 |
T |
|
| Q |
301 |
tcacgtttctcaacgtcgaaaatgaaatcctgtattgcgagagatatcaccaagcctccatatccttatagctccattcatttgcaatgttgcattcctc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5718 |
tcacgtttctcaacgtcgaaaatgaaatcctgtattgcgagagatatcaccaagcctccatatccttatagctccattcatttgcaatgttgcattcctc |
5619 |
T |
|
| Q |
401 |
aaaatttgtggttgttcgtcgaagatccgtccagaaagaaaggaacggttctccgtttgttagcttatgcgctctcttttgcatgaagtttgttgtggct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5618 |
aaaatttgtggttgttcgtcgaagatccgtccagaaagaaaggaacggttctccgtttgttagcttatgcgctctcttttgcatgaagtttgttgttcct |
5519 |
T |
|
| Q |
501 |
catgcattcagaatggttctttcccaggatttaatttcacgctcaaatgttatgctctgtttcatcattgaagtgatccttattgcagatctcaggtcaa |
600 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5518 |
catgcattcagaatggttctttcccaggctttaatttcacgctcaaatgttatgctctgtttcatcattgaagtgatccttattgcagatctcaggtcaa |
5419 |
T |
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| Q |
601 |
tttcagaagaatagagtgggttcac |
625 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5418 |
tttcagaagaatagagtgggttcac |
5394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Original strand, 23386450 - 23387074
Alignment:
| Q |
1 |
aaagagttcatcacttctcctaaaaaattgatgaacatcaacaactcggtgggagaaggaaatcacgcagctgcacctctcactctgtcagccccaccac |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23386450 |
aaagagtttatcacttctcctaaaaaattgatgaacatcaacaactcggtgggagaaggaaatcacgcagctgcacttctcactctgtcagccccaccac |
23386549 |
T |
|
| Q |
101 |
cacattatccacatccactggtttaagacgcggttccacctctggctccttacctaccgccagaacctccaccgtcttcaccgaataagtgcattattca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386550 |
cacattatccacatccactggtttaagacgcggttccacctctggctccttacctaccgccagaacctccaccgtcttcaccgaataagtgcattattca |
23386649 |
T |
|
| Q |
201 |
gctctcacattcatttccgttgtcgacactcttgctgaaaccactagatgtcgattcatatattccccttcaaccgtcgccgccaccaaaacatctaaat |
300 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386650 |
gctctcacattcatttctgttgtcgacactcttgccgaaaccactagatgtcgattcatatattccccttcaaccgtcgccgccaccaaaacatctaaat |
23386749 |
T |
|
| Q |
301 |
tcacgtttctcaacgtcgaaaatgaaatcctgtattgcgagagatatcaccaagcctccatatccttatagctccattcatttgcaatgttgcattcctc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386750 |
tcacgtttctcaacgtcgaaaatgaaatcctgtattgcgagagatatcaccaagcctccatatccttatagctccattcatttgcaatgttgcattcctc |
23386849 |
T |
|
| Q |
401 |
aaaatttgtggttgttcgtcgaagatccgtccagaaagaaaggaacggttctccgtttgttagcttatgcgctctcttttgcatgaagtttgttgtggct |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23386850 |
aaaatttgtggttgttcgtcgaagatccgtccagaaagaaaggaacggttctccgtttgttagcttatgcgctctcttttgcatgaagtttgttgttcct |
23386949 |
T |
|
| Q |
501 |
catgcattcagaatggttctttcccaggatttaatttcacgctcaaatgttatgctctgtttcatcattgaagtgatccttattgcagatctcaggtcaa |
600 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386950 |
catgcattcagaatggttctttcccaggctttaatttcacgctcaaatgttatgctctgtttcatcattgaagtgatccttattgcagatctcaggtcaa |
23387049 |
T |
|
| Q |
601 |
tttcagaagaatagagtgggttcac |
625 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
23387050 |
tttcagaagaatagagtgggttcac |
23387074 |
T |
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