View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19930_high_26 (Length: 283)

Name: NF19930_high_26
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19930_high_26
NF19930_high_26
[»] chr6 (3 HSPs)
chr6 (9-125)||(11108583-11108701)
chr6 (133-267)||(11109058-11109193)
chr6 (185-221)||(5456587-5456623)
[»] chr1 (3 HSPs)
chr1 (154-221)||(29730906-29730977)
chr1 (185-221)||(18114768-18114804)
chr1 (185-221)||(9166257-9166293)
[»] chr8 (1 HSPs)
chr8 (159-221)||(1914641-1914707)
[»] chr5 (4 HSPs)
chr5 (135-221)||(141385-141475)
chr5 (135-221)||(12289078-12289168)
chr5 (231-267)||(6818600-6818636)
chr5 (185-221)||(36187733-36187769)
[»] chr3 (3 HSPs)
chr3 (189-221)||(20354763-20354795)
chr3 (158-219)||(53684015-53684080)
chr3 (161-214)||(53436157-53436214)
[»] chr2 (1 HSPs)
chr2 (185-221)||(34504252-34504288)
[»] chr4 (1 HSPs)
chr4 (135-221)||(50685667-50685757)
[»] chr7 (1 HSPs)
chr7 (138-174)||(28324581-28324617)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 11108583 - 11108701
Alignment:
Q  9 agcataggcaagcacggaacgactattggaaggggagtcttctctggttttgaaaacgaaaagatcctttagcagt--cacccactcacatgtactctct 106  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| || |||||||||||    
T  11108583 agcataagcaagcacggaaagactattggaaggggagtcttctctggttttgaaaacgaaatgatcctttagcagtcccacccacccagatgtactctct 11108682  T
Q  107 cctcaaattgagcataaaa 125  Q
    |||||||||||||||||||    
T  11108683 cctcaaattgagcataaaa 11108701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 11109058 - 11109193
Alignment:
Q  133 gagtcatgttaatttgtgctttaaggacacatgttaaacaatttaaaagtagattctcttaaattttgtgtattcaattaattaaaagt-nnnnnnnnnt 231  Q
    |||||||||||| ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          |    
T  11109058 gagtcatgttaacttgtgccctaaggacacatgttaaacaattcaaaagtagattctcttaaattttgtgtattcaattaattaaaagtaaaaaaaaatt 11109157  T
Q  232 caaatgcattgattgcaacaaattattttcattttt 267  Q
    ||||||| |||||||||||||||||||| |||||||    
T  11109158 caaatgccttgattgcaacaaattatttccattttt 11109193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 5456587 - 5456623
Alignment:
Q  185 attctcttaaattttgtgtattcaattaattaaaagt 221  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  5456587 attctcttgaattttgtgtattcaattaatcaaaagt 5456623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 29730906 - 29730977
Alignment:
Q  154 taaggacacatgttaaacaatttaaaagtaga----ttctcttaaattttgtgtattcaattaattaaaagt 221  Q
    |||||||| ||||||| ||||  |||||||||    |||||||||||||| |||||||||||||||||||||    
T  29730906 taaggacatatgttaagcaatccaaaagtagaaacattctcttaaattttatgtattcaattaattaaaagt 29730977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 18114804 - 18114768
Alignment:
Q  185 attctcttaaattttgtgtattcaattaattaaaagt 221  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18114804 attctattaaattttgtgtattcaattaattaaaagt 18114768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 9166293 - 9166257
Alignment:
Q  185 attctcttaaattttgtgtattcaattaattaaaagt 221  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  9166293 attctcttaaattttgtgcattcagttaattaaaagt 9166257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 1914707 - 1914641
Alignment:
Q  159 acacatgttaaacaatttaaaagtaga----ttctcttaaattttgtgtattcaattaattaaaagt 221  Q
    |||||||||||  |||||||||||| |    || |||||||||||||||||||||||||||||||||    
T  1914707 acacatgttaagaaatttaaaagtataaattttttcttaaattttgtgtattcaattaattaaaagt 1914641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 141475 - 141385
Alignment:
Q  135 gtcatgttaatttgtgctttaaggacacatgttaaacaatttaaaagtaga----ttctcttaaattttgtgtattcaattaattaaaagt 221  Q
    |||||||||| ||||||| ||||||| |||||||| ||||   ||||||||    ||||||| ||||||||| ||||||||||| ||||||    
T  141475 gtcatgttaacttgtgctctaaggacgcatgttaagcaatcccaaagtagaaatattctcttgaattttgtgcattcaattaatcaaaagt 141385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 12289168 - 12289078
Alignment:
Q  135 gtcatgttaatttgtgctttaaggacacatgttaaacaatttaaaagtaga----ttctcttaaattttgtgtattcaattaattaaaagt 221  Q
    ||||| |||| ||||||  ||||| |||||||||| ||||  |||||||||    ||||||| ||||||||||||||||||||| ||||||    
T  12289168 gtcatattaacttgtgccctaagggcacatgttaagcaatccaaaagtagaaatattctcttgaattttgtgtattcaattaatcaaaagt 12289078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 6818636 - 6818600
Alignment:
Q  231 tcaaatgcattgattgcaacaaattattttcattttt 267  Q
    |||||| |||||||| |||||||||||||||||||||    
T  6818636 tcaaatacattgattacaacaaattattttcattttt 6818600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 36187769 - 36187733
Alignment:
Q  185 attctcttaaattttgtgtattcaattaattaaaagt 221  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  36187769 attcttttaaattttgtgtattcaattaataaaaagt 36187733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 20354795 - 20354763
Alignment:
Q  189 tcttaaattttgtgtattcaattaattaaaagt 221  Q
    |||||||||||||||||||||||||||||||||    
T  20354795 tcttaaattttgtgtattcaattaattaaaagt 20354763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 53684080 - 53684015
Alignment:
Q  158 gacacatgttaaacaatttaaaagtaga----ttctcttaaattttgtgtattcaattaattaaaa 219  Q
    |||||||||||| ||||| |||||||||    |||||||| |||||||||||||||||||| ||||    
T  53684080 gacacatgttaagcaattcaaaagtagaaatattctcttatattttgtgtattcaattaatcaaaa 53684015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 53436157 - 53436214
Alignment:
Q  161 acatgttaaacaatttaaaagtaga----ttctcttaaattttgtgtattcaattaat 214  Q
    ||||||||| |||||||||||||||    || |||||||||||||||||| |||||||    
T  53436157 acatgttaagcaatttaaaagtagaaatattttcttaaattttgtgtatttaattaat 53436214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 34504288 - 34504252
Alignment:
Q  185 attctcttaaattttgtgtattcaattaattaaaagt 221  Q
    |||||||||||||||||| ||||||||||||||||||    
T  34504288 attctcttaaattttgtgcattcaattaattaaaagt 34504252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 50685757 - 50685667
Alignment:
Q  135 gtcatgttaatttgtgctttaaggacacatgttaaacaatttaaaagtaga----ttctcttaaattttgtgtattcaattaattaaaagt 221  Q
    ||||||||||  |||||| ||||| ||||| |||| ||||| |||| ||||    || |||| ||||||||| ||||||||||||||||||    
T  50685757 gtcatgttaacctgtgctctaagggcacattttaagcaattcaaaaatagaaatattttcttgaattttgtgcattcaattaattaaaagt 50685667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 28324581 - 28324617
Alignment:
Q  138 atgttaatttgtgctttaaggacacatgttaaacaat 174  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28324581 atgttaacttgtgttttaaggacacatgttaaacaat 28324617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University