View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_high_33 (Length: 250)
Name: NF19930_high_33
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_high_33 |
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| [»] scaffold1452 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 43948015 - 43947777
Alignment:
| Q |
1 |
ccataaactataaaatatcgagaaaaaattaataacaggacaaaacatgcaaactatcacctaaaccgcagaattcaacaaaagtgttgtttataaggaa |
100 |
Q |
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| T |
43948015 |
ccataaactataaaatatcgagaaaaaattaataacaggacaaaacatgcaaactatcacctaaaccgcagaattcaacaaaagtgttgtttataaggaa |
43947916 |
T |
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| Q |
101 |
gacaagaataacctgtttgagaaactcctcgtgccaggtatcaagtgaatcaaacgacctcatgacattcacatcatacgcaagaacacagcaatccgcc |
200 |
Q |
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| T |
43947915 |
gacaagaataacctgtttgagaaactcctcgtgccaggtatcaagtgaatcaaacgacctcatgacattcacatcatacgcaagaacacagcaatccgcc |
43947816 |
T |
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| Q |
201 |
cctctataaaacgcaactccaagactttggaatctctct |
239 |
Q |
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| T |
43947815 |
cctctataaaacgcaactccaagactttggaatctctct |
43947777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1452 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold1452
Description:
Target: scaffold1452; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 426 - 554
Alignment:
| Q |
110 |
aacctgtttgagaaactcctcgtgccaggtatcaagtgaatcaaacgacctcatgacattcacatcatacgcaagaacacagcaatccgcccctctataa |
209 |
Q |
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| T |
426 |
aacctgtttcagaaactcctcgtgccagttatcaagtgtgtcaaatgacttcatcacattaacatcataaacgagaacacagcaatcggcccctctataa |
525 |
T |
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| Q |
210 |
aacgcaactccaagactttggaatctctc |
238 |
Q |
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| T |
526 |
aatgcaacaccaagactttgaaatctctc |
554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 26274170 - 26274227
Alignment:
| Q |
181 |
caagaacacagcaatccgcccctctataaaacgcaactccaagactttggaatctctc |
238 |
Q |
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| T |
26274170 |
caagaacacagcaatcagccccacgatagaaagcaactcctaggctttggaatctctc |
26274227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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